Literature DB >> 22091083

2-Amino-3-carb-oxy-pyridinium nitrate.

Fadila Berrah, Sofiane Bouacida, Thierry Roisnel.   

Abstract

In the crystal structure of the title compound, C(6)H(7)N(2)O(2) (+)·NO(3) (-), the cations are linked via C-H⋯O hydrogen bonds, forming infinite chains running along the b axis. These chains are further linked through N-H⋯O, O-H⋯O and C-H⋯O hydrogen bonds to the nitrate anions, forming well-separated infinite planar layers parallel to (001).

Entities:  

Year:  2011        PMID: 22091083      PMCID: PMC3213504          DOI: 10.1107/S1600536811027978

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For hybrid compounds based on nicotinic acid, see: Athimoolam et al. (2005 ▶); Athimoolam & Rajaram (2005a ▶,b ▶); Chen (2009 ▶); Slouf (2001 ▶); Ye et al. (2010 ▶). For hybrid compounds based on amino-nicotinic acid derivatives, see: Akriche & Rzaigui (2007 ▶); Berrah et al. (2011a ▶); Giantsidis & Turnbull (2000 ▶). For related nitrate compounds, see: Berrah et al. (2011b ▶); Jebas et al. (2006 ▶).

Experimental

Crystal data

C6H7N2O2 +·NO3 M = 201.15 Tetragonal, a = 16.122 (2) Å c = 12.446 (3) Å V = 3235.0 (11) Å3 Z = 16 Mo Kα radiation μ = 0.15 mm−1 T = 150 K 0.39 × 0.07 × 0.05 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2002 ▶) T min = 0.476, T max = 0.993 5438 measured reflections 1509 independent reflections 921 reflections with I > 2σ(I) R int = 0.112

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.158 S = 0.97 1509 reflections 128 parameters 1 restraint H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SIR2002 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and DIAMOND (Brandenburg & Berndt, 2001 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811027978/lx2193sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811027978/lx2193Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811027978/lx2193Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H7N2O2+·NO3Dx = 1.652 Mg m3
Mr = 201.15Mo Kα radiation, λ = 0.71073 Å
Tetragonal, I41cdCell parameters from 491 reflections
Hall symbol: I 4bw -2cθ = 3.3–20.3°
a = 16.122 (2) ŵ = 0.15 mm1
c = 12.446 (3) ÅT = 150 K
V = 3235.0 (11) Å3Needle, colourless
Z = 160.39 × 0.07 × 0.05 mm
F(000) = 1664
Bruker APEXII diffractometer921 reflections with I > 2σ(I)
graphiteRint = 0.112
CCD rotation images, thin slices scansθmax = 27.5°, θmin = 3.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 2002)h = −16→20
Tmin = 0.476, Tmax = 0.993k = −13→20
5438 measured reflectionsl = −16→10
1509 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: difference Fourier map
wR(F2) = 0.158H-atom parameters constrained
S = 0.97w = 1/[σ2(Fo2) + (0.076P)2] where P = (Fo2 + 2Fc2)/3
1509 reflections(Δ/σ)max < 0.001
128 parametersΔρmax = 0.41 e Å3
1 restraintΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.1754 (3)0.1137 (3)0.0309 (6)0.0288 (11)
C20.1875 (3)0.0223 (2)0.0276 (6)0.0229 (10)
C30.1218 (3)−0.0300 (3)0.0259 (6)0.0295 (12)
H30.0686−0.00780.02640.035*
C40.1311 (3)−0.1174 (3)0.0233 (7)0.0309 (11)
H40.0854−0.15260.02150.037*
C50.2092 (3)−0.1469 (3)0.0235 (7)0.0302 (12)
H50.2179−0.20390.02210.036*
C60.2702 (2)−0.0099 (3)0.0279 (10)0.0234 (10)
N10.1623 (2)−0.0149 (2)0.2777 (8)0.0247 (8)
N20.2755 (2)−0.0950 (2)0.0256 (5)0.0269 (9)
H20.3242−0.11680.02560.032*
N30.3388 (2)0.0327 (2)0.0312 (5)0.0308 (10)
H3A0.38580.00750.0320.037*
H3B0.33710.0860.03260.037*
O10.20156 (19)0.05016 (19)0.2755 (4)0.0313 (8)
O20.08451 (16)−0.01536 (18)0.2757 (5)0.0293 (8)
O30.19907 (18)−0.08530 (18)0.2798 (5)0.0309 (8)
O50.09671 (19)0.13575 (18)0.0242 (4)0.0342 (9)
H510.09320.18650.02590.051*
O40.2318 (2)0.1628 (2)0.0360 (4)0.0355 (10)
U11U22U33U12U13U23
C10.035 (3)0.017 (2)0.035 (3)−0.002 (2)−0.001 (4)−0.004 (3)
C20.020 (2)0.021 (3)0.028 (2)0.0022 (16)0.001 (3)0.002 (4)
C30.025 (3)0.021 (2)0.042 (3)−0.0068 (19)0.000 (4)0.003 (3)
C40.042 (3)0.016 (3)0.035 (3)−0.001 (2)−0.003 (5)0.000 (3)
C50.040 (3)0.014 (2)0.036 (3)−0.014 (2)−0.004 (4)−0.001 (4)
C60.022 (2)0.026 (3)0.022 (2)−0.0025 (18)−0.006 (5)0.003 (3)
N10.0198 (18)0.020 (2)0.0341 (18)−0.0058 (16)0.006 (4)−0.001 (4)
N20.024 (2)0.022 (2)0.035 (2)0.0103 (15)−0.005 (3)−0.002 (3)
N30.0137 (19)0.029 (2)0.050 (2)−0.0035 (15)0.003 (3)0.002 (3)
O10.0253 (18)0.0256 (17)0.043 (2)−0.0062 (15)0.000 (3)−0.006 (3)
O20.0124 (15)0.0231 (18)0.052 (2)0.0030 (13)0.004 (3)0.004 (3)
O30.0130 (16)0.0233 (17)0.056 (2)0.0049 (13)−0.002 (3)−0.007 (3)
O50.0233 (17)0.0205 (19)0.059 (2)0.0042 (14)0.004 (3)0.000 (3)
O40.0253 (19)0.0212 (18)0.060 (3)0.0027 (15)−0.003 (3)−0.005 (3)
C1—O41.207 (6)C5—H50.93
C1—O51.319 (6)C6—N31.303 (5)
C1—C21.487 (6)C6—N21.375 (6)
C2—C31.354 (6)N1—O11.225 (4)
C2—C61.431 (5)N1—O21.255 (4)
C3—C41.417 (6)N1—O31.281 (4)
C3—H30.93N2—H20.86
C4—C51.347 (8)N3—H3A0.86
C4—H40.93N3—H3B0.86
C5—N21.359 (6)O5—H510.82
O4—C1—O5123.4 (4)N2—C5—H5119.4
O4—C1—C2123.5 (4)N3—C6—N2118.2 (4)
O5—C1—C2113.0 (4)N3—C6—C2126.9 (5)
C3—C2—C6120.2 (4)N2—C6—C2114.8 (4)
C3—C2—C1121.0 (4)O1—N1—O2121.4 (4)
C6—C2—C1118.8 (4)O1—N1—O3121.4 (3)
C2—C3—C4122.5 (4)O2—N1—O3117.2 (3)
C2—C3—H3118.8C5—N2—C6124.5 (4)
C4—C3—H3118.8C5—N2—H2117.8
C5—C4—C3116.8 (4)C6—N2—H2117.8
C5—C4—H4121.6C6—N3—H3A120
C3—C4—H4121.6C6—N3—H3B120
C4—C5—N2121.2 (4)H3A—N3—H3B120
C4—C5—H5119.4C1—O5—H51109.5
O4—C1—C2—C3177.5 (7)C3—C2—C6—N3−178.8 (9)
O5—C1—C2—C3−4.4 (11)C1—C2—C6—N30.4 (17)
O4—C1—C2—C6−1.6 (13)C3—C2—C6—N20.3 (14)
O5—C1—C2—C6176.4 (9)C1—C2—C6—N2179.5 (7)
C6—C2—C3—C4−0.6 (12)C4—C5—N2—C60.0 (14)
C1—C2—C3—C4−179.7 (7)N3—C6—N2—C5179.1 (8)
C2—C3—C4—C50.5 (11)C2—C6—N2—C5−0.1 (15)
C3—C4—C5—N2−0.3 (12)
D—H···AD—HH···AD···AD—H···A
N2—H2···O3i0.861.972.803 (4)162
N3—H3A···O2i0.862.183.017 (4)165
N3—H3A···O2ii0.862.432.967 (4)121
N3—H3B···O40.862.102.716 (5)128
O5—H51···O3iii0.821.852.670 (4)180
C4—H4···O1iv0.932.423.197 (6)141
C5—H5···O4v0.932.303.216 (6)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O3i0.861.972.803 (4)162
N3—H3A⋯O2i0.862.183.017 (4)165
N3—H3A⋯O2ii0.862.432.967 (4)121
N3—H3B⋯O40.862.102.716 (5)128
O5—H51⋯O3iii0.821.852.670 (4)180
C4—H4⋯O1iv0.932.423.197 (6)141
C5—H5⋯O4v0.932.303.216 (6)167

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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