| Literature DB >> 22589972 |
Fadila Berrah, Rafika Bouchene, Sofiane Bouacida, Thierry Roisnel.
Abstract
The two-dimensional crystal packing of the title compound, C(3)H(5)N(4)O(2) (+)·NO(2) (-)·H(2)O, results from the stacking of well separated layers (i.e. with nothing between the layers) parallel to the (-113) plane in which adjacent cations adopt a head-to-head arrangement such that two -COOH groups are linked via two water mol-ecules (the water O atom behaves simultaneously as donor and acceptor of hydrogen bonds) and two -NH(2) groups are linked through two nitrate anions. This arrangement leads to alternating hydro-philic and hydro-phobic zones in which O-H⋯O and N-H⋯O hydrogen bonds, respectively, are observed.Entities:
Year: 2012 PMID: 22589972 PMCID: PMC3344063 DOI: 10.1107/S1600536812011154
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C3H5N4O2+·NO3−·H2O | |
| Triclinic, | |
| Mo | |
| Cell parameters from 1584 reflections | |
| θ = 3.4–27.4° | |
| α = 97.572 (12)° | µ = 0.17 mm−1 |
| β = 100.524 (13)° | |
| γ = 98.933 (13)° | Stick, colourless |
| 0.42 × 0.2 × 0.11 mm |
| Bruker APEXII diffractometer | 1563 reflections with |
| Graphite monochromator | |
| CCD rotation images, thin slices scans | θmax = 27.5°, θmin = 3.1° |
| Absorption correction: multi-scan ( | |
| 4012 measured reflections | |
| 1821 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1821 reflections | (Δ/σ)max < 0.001 |
| 134 parameters | Δρmax = 0.35 e Å−3 |
| 0 restraints | Δρmin = −0.29 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | −0.1877 (2) | −0.15602 (16) | 0.31865 (9) | 0.0218 (3) | |
| N3 | −0.0716 (3) | 0.32704 (19) | 0.20042 (11) | 0.0174 (3) | |
| O4 | 0.2001 (2) | 0.80430 (17) | 0.13489 (10) | 0.0241 (3) | |
| O5 | −0.2192 (2) | 0.59982 (18) | 0.06811 (10) | 0.0234 (3) | |
| H5 | −0.2505 | 0.6888 | 0.0311 | 0.035* | |
| O1W | −0.3752 (3) | 0.82557 (19) | −0.06786 (10) | 0.0272 (3) | |
| H2W | −0.319 (5) | 0.946 (4) | −0.0762 (18) | 0.041* | |
| H1W | −0.544 (5) | 0.791 (3) | −0.1043 (19) | 0.041* | |
| N5 | 0.5272 (3) | 0.2985 (2) | 0.39298 (11) | 0.0219 (3) | |
| H5A | 0.4999 | 0.185 | 0.4172 | 0.026* | |
| H5B | 0.6829 | 0.3811 | 0.4162 | 0.026* | |
| O2 | −0.0623 (2) | −0.34292 (17) | 0.44188 (10) | 0.0284 (3) | |
| O3 | 0.2143 (2) | −0.06970 (17) | 0.43144 (10) | 0.0262 (3) | |
| N2 | 0.3435 (2) | 0.51522 (18) | 0.27273 (10) | 0.0158 (3) | |
| H2 | 0.4806 | 0.6154 | 0.2854 | 0.019* | |
| N4 | 0.0781 (3) | 0.23345 (19) | 0.27646 (10) | 0.0167 (3) | |
| H4 | 0.0176 | 0.1178 | 0.2937 | 0.02* | |
| N1 | −0.0104 (3) | −0.18948 (19) | 0.39831 (10) | 0.0171 (3) | |
| C3 | 0.3308 (3) | 0.3458 (2) | 0.32034 (12) | 0.0155 (3) | |
| C2 | 0.0952 (3) | 0.4958 (2) | 0.20038 (12) | 0.0165 (3) | |
| C1 | 0.0296 (3) | 0.6523 (2) | 0.12995 (13) | 0.0175 (3) |
| O1 | 0.0199 (5) | 0.0212 (6) | 0.0216 (6) | 0.0009 (4) | −0.0034 (4) | 0.0088 (5) |
| N3 | 0.0166 (6) | 0.0160 (6) | 0.0191 (7) | 0.0023 (5) | −0.0004 (5) | 0.0077 (5) |
| O4 | 0.0237 (6) | 0.0185 (6) | 0.0289 (6) | −0.0007 (5) | 0.0009 (5) | 0.0109 (5) |
| O5 | 0.0219 (6) | 0.0198 (6) | 0.0261 (6) | 0.0013 (5) | −0.0043 (5) | 0.0114 (5) |
| O1W | 0.0219 (6) | 0.0221 (6) | 0.0343 (7) | −0.0020 (5) | −0.0057 (5) | 0.0159 (5) |
| N5 | 0.0150 (6) | 0.0186 (7) | 0.0293 (8) | −0.0034 (5) | −0.0034 (5) | 0.0123 (6) |
| O2 | 0.0274 (6) | 0.0189 (6) | 0.0339 (7) | −0.0075 (5) | −0.0047 (5) | 0.0156 (5) |
| O3 | 0.0183 (6) | 0.0212 (6) | 0.0334 (7) | −0.0073 (5) | −0.0039 (5) | 0.0105 (5) |
| N2 | 0.0135 (6) | 0.0134 (6) | 0.0190 (6) | −0.0007 (5) | 0.0002 (5) | 0.0060 (5) |
| N4 | 0.0149 (6) | 0.0150 (6) | 0.0195 (6) | 0.0004 (5) | −0.0011 (5) | 0.0095 (5) |
| N1 | 0.0166 (6) | 0.0139 (6) | 0.0195 (7) | −0.0002 (5) | 0.0015 (5) | 0.0047 (5) |
| C3 | 0.0153 (7) | 0.0134 (7) | 0.0177 (7) | 0.0016 (5) | 0.0023 (6) | 0.0045 (6) |
| C2 | 0.0151 (7) | 0.0153 (7) | 0.0182 (7) | 0.0021 (5) | 0.0008 (6) | 0.0042 (6) |
| C1 | 0.0201 (7) | 0.0136 (7) | 0.0187 (7) | 0.0022 (6) | 0.0031 (6) | 0.0053 (6) |
| O1—N1 | 1.2720 (16) | N5—H5B | 0.86 |
| N3—C2 | 1.3023 (19) | O2—N1 | 1.2443 (16) |
| N3—N4 | 1.3779 (18) | O3—N1 | 1.2426 (16) |
| O4—C1 | 1.2139 (18) | N2—C3 | 1.3529 (19) |
| O5—C1 | 1.3051 (19) | N2—C2 | 1.3698 (19) |
| O5—H5 | 0.82 | N2—H2 | 0.86 |
| O1W—H2W | 0.84 (3) | N4—C3 | 1.3443 (18) |
| O1W—H1W | 0.86 (2) | N4—H4 | 0.86 |
| N5—C3 | 1.3155 (19) | C2—C1 | 1.495 (2) |
| N5—H5A | 0.86 | ||
| C2—N3—N4 | 103.98 (12) | O3—N1—O2 | 120.44 (13) |
| C1—O5—H5 | 109.5 | O3—N1—O1 | 119.79 (12) |
| H2W—O1W—H1W | 107 (2) | O2—N1—O1 | 119.77 (12) |
| C3—N5—H5A | 120 | N5—C3—N4 | 126.95 (13) |
| C3—N5—H5B | 120 | N5—C3—N2 | 127.13 (13) |
| H5A—N5—H5B | 120 | N4—C3—N2 | 105.91 (12) |
| C3—N2—C2 | 106.57 (12) | N3—C2—N2 | 112.16 (13) |
| C3—N2—H2 | 126.7 | N3—C2—C1 | 124.96 (14) |
| C2—N2—H2 | 126.7 | N2—C2—C1 | 122.89 (13) |
| C3—N4—N3 | 111.38 (12) | O4—C1—O5 | 128.33 (15) |
| C3—N4—H4 | 124.3 | O4—C1—C2 | 120.16 (14) |
| N3—N4—H4 | 124.3 | O5—C1—C2 | 111.50 (13) |
| C2—N3—N4—C3 | −0.23 (16) | C3—N2—C2—N3 | 0.52 (17) |
| N3—N4—C3—N5 | −178.18 (15) | C3—N2—C2—C1 | −179.10 (13) |
| N3—N4—C3—N2 | 0.55 (16) | N3—C2—C1—O4 | −179.23 (15) |
| C2—N2—C3—N5 | 178.10 (15) | N2—C2—C1—O4 | 0.3 (2) |
| C2—N2—C3—N4 | −0.62 (15) | N3—C2—C1—O5 | 0.5 (2) |
| N4—N3—C2—N2 | −0.18 (16) | N2—C2—C1—O5 | −179.93 (13) |
| N4—N3—C2—C1 | 179.43 (14) |
| H··· | ||||
| O5—H5···O1 | 0.82 | 1.72 | 2.5210 (17) | 166 |
| O1 | 0.84 (3) | 1.97 (3) | 2.7985 (18) | 166 (2) |
| O1 | 0.86 (2) | 2.05 (3) | 2.9011 (19) | 172 (2) |
| N5—H5 | 0.86 | 2.1 | 2.8672 (18) | 148 |
| N5—H5 | 0.86 | 2.44 | 3.0498 (19) | 129 |
| N5—H5 | 0.86 | 2.04 | 2.8352 (18) | 154 |
| N5—H5 | 0.86 | 2.41 | 3.0060 (18) | 127 |
| N2—H2···O1iv | 0.86 | 2.02 | 2.8790 (17) | 178 |
| N4—H4···O1 | 0.86 | 2.06 | 2.9112 (18) | 171 |
| N4—H4···O3 | 0.86 | 2.42 | 3.0590 (18) | 132 |
| N4—H4···N1 | 0.86 | 2.59 | 3.4099 (19) | 160 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O5—H5⋯O1 | 0.82 | 1.72 | 2.5210 (17) | 166 |
| O1 | 0.84 (3) | 1.97 (3) | 2.7985 (18) | 166 (2) |
| O1 | 0.86 (2) | 2.05 (3) | 2.9011 (19) | 172 (2) |
| N5—H5 | 0.86 | 2.04 | 2.8352 (18) | 154 |
| N2—H2⋯O1iii | 0.86 | 2.02 | 2.8790 (17) | 178 |
| N4—H4⋯O1 | 0.86 | 2.06 | 2.9112 (18) | 171 |
Symmetry codes: (i) ; (ii) ; (iii) .