Literature DB >> 22590365

2-Amino-3-carb-oxy-pyridinium chloride hemihydrate.

Rafika Bouchene, Sofiane Bouacida, Fadila Berrah, Jean-Claude Daran.   

Abstract

The asymmetric unit of the title compound, C(6)H(7)N(2)O(2) (+)·Cl(-)·0.5H(2)O, consists of two protonated 2-amino-3-carb-oxy-pyridine cations, two chloride anions and one mol-ecule of water. The crystal packing can be described as alternating layers of cations and anions parallel to (110), which are linked together by O(w)-H⋯Cl inter-actions. In the crystal, four types of classical hydrogen bonds are observed, viz. cation-anion (O-H⋯Cl and N-H⋯Cl), cation-cation (N-H⋯O), cation-water (N-H⋯O(w)) and water-anion (O(w)-H⋯Cl), resulting in the formation of an infinite three-dimensional network.

Entities:  

Year:  2012        PMID: 22590365      PMCID: PMC3344603          DOI: 10.1107/S1600536812017230

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of hybrid organic–inorganic compounds, see: Bouacida (2008 ▶); Kickelbick (2007 ▶); Mitzi et al. (1998 ▶); Asaji et al. (2007 ▶); Lynch & Jones (2004 ▶). For related structures, see: Beatty (2003 ▶); Sengupta et al. (2001 ▶); Berrah et al. (2011a ▶,b ▶,c ▶); Akriche & Rzaigui (2007 ▶).

Experimental

Crystal data

C6H7N2O2 +·Cl−·0.5H2O M = 183.60 Triclinic, a = 7.8949 (4) Å b = 9.1639 (5) Å c = 11.0285 (6) Å α = 81.392 (4)° β = 81.276 (3)° γ = 81.682 (4)° V = 773.68 (7) Å3 Z = 4 Mo Kα radiation μ = 0.45 mm−1 T = 180 K 0.1 × 0.08 × 0.06 mm

Data collection

Agilent Xcalibur Sapphire1 long-nozzle diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.831, T max = 1 14449 measured reflections 3600 independent reflections 2857 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.08 S = 1.01 3600 reflections 214 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.28 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR2002 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia,1997 ▶) and DIAMOND (Brandenburg & Berndt, 2001 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812017230/bq2352sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812017230/bq2352Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812017230/bq2352Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H7N2O2+·Cl·0.5H2OZ = 4
Mr = 183.60F(000) = 380
Triclinic, P1Dx = 1.576 Mg m3
a = 7.8949 (4) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.1639 (5) ÅCell parameters from 8921 reflections
c = 11.0285 (6) Åθ = 3.0–28.3°
α = 81.392 (4)°µ = 0.45 mm1
β = 81.276 (3)°T = 180 K
γ = 81.682 (4)°Box, colourless
V = 773.68 (7) Å30.1 × 0.08 × 0.06 mm
Agilent Xcalibur Sapphire1 long-nozzle diffractometer3600 independent reflections
Radiation source: fine-focus sealed tube2857 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.033
Detector resolution: 8.2632 pixels mm-1θmax = 28.4°, θmin = 3.0°
ω scansh = −10→9
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −12→12
Tmin = 0.831, Tmax = 1l = −13→14
14449 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.08H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0442P)2 + 0.1332P] where P = (Fo2 + 2Fc2)/3
3600 reflections(Δ/σ)max = 0.006
214 parametersΔρmax = 0.26 e Å3
3 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N3A−0.02482 (16)0.24894 (14)0.18532 (11)0.0277 (3)
H3A1−0.07720.29620.24480.033*
H3A2−0.04970.27610.11140.033*
N3B0.13489 (17)0.59931 (14)0.23112 (12)0.0291 (3)
H3B10.08570.64320.29330.035*
H3B20.10530.62980.15880.035*
O1W0.33167 (15)0.38876 (12)0.72134 (10)0.0306 (2)
H1W0.287 (2)0.3146 (14)0.7070 (17)0.046*
H2W0.280 (2)0.4650 (14)0.6834 (16)0.046*
Cl10.19706 (5)0.11808 (4)0.64870 (3)0.03012 (11)
Cl20.14081 (5)0.65043 (4)0.55111 (3)0.03071 (11)
O1A0.05136 (14)0.18895 (12)−0.04721 (9)0.0301 (2)
O2A0.26652 (14)0.01182 (12)−0.09112 (9)0.0287 (2)
H2A0.24450.0392−0.16190.043*
O1B0.20803 (14)0.54951 (12)−0.00916 (10)0.0333 (3)
N4A0.12830 (15)0.09603 (13)0.32534 (10)0.0220 (2)
H4A0.0740.14860.38090.026*
N4B0.29795 (16)0.44117 (14)0.36162 (11)0.0259 (3)
H4B0.24250.4880.42040.031*
C2B0.34601 (17)0.40270 (14)0.15203 (12)0.0193 (3)
C2A0.19059 (17)0.05053 (15)0.11658 (12)0.0196 (3)
C3A0.09315 (17)0.13510 (15)0.20751 (12)0.0201 (3)
C5A0.24283 (19)−0.01981 (16)0.36061 (13)0.0256 (3)
H5A0.2593−0.04210.44340.031*
C7A0.30817 (19)−0.06680 (16)0.15319 (13)0.0238 (3)
H7A0.372−0.12270.09420.029*
C1A0.16107 (18)0.09171 (15)−0.01399 (12)0.0210 (3)
O2B0.38993 (13)0.34859 (11)−0.05118 (9)0.0272 (2)
H2B0.36380.3747−0.12110.041*
C1B0.30608 (17)0.44226 (15)0.02359 (12)0.0209 (3)
C7B0.47068 (18)0.28766 (16)0.18251 (13)0.0227 (3)
H7B0.53040.23390.12080.027*
C3B0.25557 (18)0.48538 (15)0.24663 (13)0.0218 (3)
C5B0.4206 (2)0.32921 (17)0.39066 (14)0.0279 (3)
H5B0.44410.30640.47190.033*
C6B0.51055 (19)0.24892 (17)0.30269 (13)0.0264 (3)
H6B0.59560.1710.3220.032*
C6A0.3345 (2)−0.10448 (17)0.27672 (14)0.0281 (3)
H6A0.413−0.18560.30080.034*
U11U22U33U12U13U23
N3A0.0289 (7)0.0298 (7)0.0217 (6)0.0094 (6)−0.0026 (5)−0.0084 (5)
N3B0.0302 (7)0.0268 (6)0.0280 (7)0.0051 (6)−0.0008 (5)−0.0080 (5)
O1W0.0410 (7)0.0254 (6)0.0259 (5)0.0005 (5)−0.0104 (5)−0.0036 (4)
Cl10.0377 (2)0.0322 (2)0.02155 (18)−0.00542 (16)−0.00607 (15)−0.00379 (14)
Cl20.0382 (2)0.0302 (2)0.02172 (18)0.00677 (16)−0.00392 (15)−0.00771 (14)
O1A0.0310 (6)0.0335 (6)0.0227 (5)0.0100 (5)−0.0058 (4)−0.0049 (4)
O2A0.0349 (6)0.0301 (6)0.0179 (5)0.0084 (5)−0.0028 (4)−0.0059 (4)
O1B0.0351 (6)0.0326 (6)0.0278 (6)0.0113 (5)−0.0065 (5)−0.0024 (4)
N4A0.0249 (6)0.0228 (6)0.0185 (5)−0.0021 (5)−0.0001 (5)−0.0062 (4)
N4B0.0261 (6)0.0306 (7)0.0208 (6)−0.0008 (5)0.0008 (5)−0.0093 (5)
C2B0.0190 (6)0.0178 (6)0.0209 (6)−0.0034 (5)−0.0004 (5)−0.0032 (5)
C2A0.0190 (7)0.0188 (6)0.0209 (7)−0.0021 (5)−0.0015 (5)−0.0042 (5)
C3A0.0193 (7)0.0216 (7)0.0197 (6)−0.0041 (5)−0.0017 (5)−0.0033 (5)
C5A0.0304 (8)0.0265 (7)0.0202 (7)−0.0028 (6)−0.0061 (6)−0.0014 (6)
C7A0.0250 (7)0.0223 (7)0.0232 (7)0.0005 (6)−0.0013 (6)−0.0055 (5)
C1A0.0211 (7)0.0212 (7)0.0204 (7)−0.0028 (6)−0.0003 (5)−0.0045 (5)
O2B0.0330 (6)0.0277 (5)0.0197 (5)0.0050 (5)−0.0058 (4)−0.0058 (4)
C1B0.0191 (7)0.0204 (7)0.0225 (7)−0.0017 (6)−0.0007 (5)−0.0039 (5)
C7B0.0224 (7)0.0227 (7)0.0232 (7)−0.0025 (6)−0.0009 (6)−0.0058 (5)
C3B0.0201 (7)0.0217 (7)0.0239 (7)−0.0049 (6)−0.0005 (5)−0.0043 (5)
C5B0.0284 (8)0.0344 (8)0.0210 (7)−0.0043 (7)−0.0050 (6)−0.0024 (6)
C6B0.0247 (7)0.0269 (7)0.0264 (7)0.0007 (6)−0.0059 (6)−0.0013 (6)
C6A0.0300 (8)0.0249 (7)0.0273 (7)0.0049 (6)−0.0070 (6)−0.0018 (6)
N3A—C3A1.3143 (18)C2B—C7B1.3738 (19)
N3A—H3A10.86C2B—C3B1.4236 (19)
N3A—H3A20.86C2B—C1B1.4785 (18)
N3B—C3B1.3172 (18)C2A—C7A1.3695 (19)
N3B—H3B10.86C2A—C3A1.4227 (19)
N3B—H3B20.86C2A—C1A1.4778 (18)
O1W—H1W0.854 (9)C5A—C6A1.353 (2)
O1W—H2W0.843 (9)C5A—H5A0.93
O1A—C1A1.2058 (17)C7A—C6A1.394 (2)
O2A—C1A1.3221 (16)C7A—H7A0.93
O2A—H2A0.82O2B—C1B1.3179 (16)
O1B—C1B1.2058 (17)O2B—H2B0.82
N4A—C5A1.3420 (18)C7B—C6B1.3911 (19)
N4A—C3A1.3548 (17)C7B—H7B0.93
N4A—H4A0.86C5B—C6B1.357 (2)
N4B—C5B1.342 (2)C5B—H5B0.93
N4B—C3B1.3491 (18)C6B—H6B0.93
N4B—H4B0.86C6A—H6A0.93
C3A—N3A—H3A1120C2A—C7A—C6A121.60 (13)
C3A—N3A—H3A2120C2A—C7A—H7A119.2
H3A1—N3A—H3A2120C6A—C7A—H7A119.2
C3B—N3B—H3B1120O1A—C1A—O2A123.10 (12)
C3B—N3B—H3B2120O1A—C1A—C2A123.28 (12)
H3B1—N3B—H3B2120O2A—C1A—C2A113.62 (12)
H1W—O1W—H2W106.3 (15)C1B—O2B—H2B109.5
C1A—O2A—H2A109.5O1B—C1B—O2B123.72 (13)
C5A—N4A—C3A123.91 (12)O1B—C1B—C2B123.43 (12)
C5A—N4A—H4A118O2B—C1B—C2B112.84 (12)
C3A—N4A—H4A118C2B—C7B—C6B122.19 (13)
C5B—N4B—C3B124.58 (13)C2B—C7B—H7B118.9
C5B—N4B—H4B117.7C6B—C7B—H7B118.9
C3B—N4B—H4B117.7N3B—C3B—N4B118.05 (13)
C7B—C2B—C3B118.77 (12)N3B—C3B—C2B125.61 (13)
C7B—C2B—C1B121.29 (12)N4B—C3B—C2B116.33 (13)
C3B—C2B—C1B119.94 (12)N4B—C5B—C6B120.70 (13)
C7A—C2A—C3A118.82 (12)N4B—C5B—H5B119.7
C7A—C2A—C1A122.21 (12)C6B—C5B—H5B119.7
C3A—C2A—C1A118.96 (12)C5B—C6B—C7B117.41 (14)
N3A—C3A—N4A118.07 (12)C5B—C6B—H6B121.3
N3A—C3A—C2A125.06 (12)C7B—C6B—H6B121.3
N4A—C3A—C2A116.85 (12)C5A—C6A—C7A118.20 (14)
N4A—C5A—C6A120.56 (13)C5A—C6A—H6A120.9
N4A—C5A—H5A119.7C7A—C6A—H6A120.9
C6A—C5A—H5A119.7
C5A—N4A—C3A—N3A178.44 (13)C7B—C2B—C1B—O2B5.75 (18)
C5A—N4A—C3A—C2A−2.8 (2)C3B—C2B—C1B—O2B−174.82 (12)
C7A—C2A—C3A—N3A−179.18 (14)C3B—C2B—C7B—C6B0.4 (2)
C1A—C2A—C3A—N3A0.5 (2)C1B—C2B—C7B—C6B179.82 (13)
C7A—C2A—C3A—N4A2.20 (19)C5B—N4B—C3B—N3B−178.55 (13)
C1A—C2A—C3A—N4A−178.08 (12)C5B—N4B—C3B—C2B1.8 (2)
C3A—N4A—C5A—C6A1.4 (2)C7B—C2B—C3B—N3B179.06 (13)
C3A—C2A—C7A—C6A−0.2 (2)C1B—C2B—C3B—N3B−0.4 (2)
C1A—C2A—C7A—C6A−179.93 (14)C7B—C2B—C3B—N4B−1.36 (19)
C7A—C2A—C1A—O1A175.54 (13)C1B—C2B—C3B—N4B179.19 (12)
C3A—C2A—C1A—O1A−4.2 (2)C3B—N4B—C5B—C6B−1.3 (2)
C7A—C2A—C1A—O2A−4.50 (19)N4B—C5B—C6B—C7B0.1 (2)
C3A—C2A—C1A—O2A175.79 (12)C2B—C7B—C6B—C5B0.3 (2)
C7B—C2B—C1B—O1B−173.77 (14)N4A—C5A—C6A—C7A0.8 (2)
C3B—C2B—C1B—O1B5.7 (2)C2A—C7A—C6A—C5A−1.3 (2)
D—H···AD—HH···AD···AD—H···A
O1W—H1W···Cl10.85 (1)2.24 (1)3.0887 (12)173 (2)
O1W—H2W···Cl20.84 (2)2.33 (2)3.1639 (12)170 (2)
O2A—H2A···Cl1i0.822.182.9948 (11)177
O2B—H2B···O1Wi0.821.782.5818 (15)166
N3B—H3B2···O1B0.862.102.7176 (17)128
N3B—H3B2···O1Aii0.862.252.9903 (17)144
N3A—H3A2···O1A0.862.042.6644 (16)129
N3A—H3A2···O1Bii0.862.172.8781 (17)140
N3A—H3A1···Cl2iii0.862.343.1447 (13)156
N4A—H4A···Cl2iii0.862.443.2265 (12)152
N4B—H4B···Cl20.862.213.0510 (13)166
C5A—H5A···Cl10.932.823.5417 (15)135
C6A—H6A···O1Wiv0.932.553.427 (2)158
C7A—H7A···O2A0.932.422.7397 (17)100
C7B—H7B···O2B0.932.372.7065 (17)101
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1W⋯Cl10.85 (1)2.24 (1)3.0887 (12)173 (2)
O1W—H2W⋯Cl20.84 (2)2.33 (2)3.1639 (12)170 (2)
O2A—H2A⋯Cl1i0.822.182.9948 (11)177
O2B—H2B⋯O1Wi0.821.782.5818 (15)166
N3B—H3B2⋯O1B0.862.102.7176 (17)128
N3B—H3B2⋯O1Aii0.862.252.9903 (17)144
N3A—H3A2⋯O1A0.862.042.6644 (16)129
N3A—H3A2⋯O1Bii0.862.172.8781 (17)140
N3A—H3A1⋯Cl2iii0.862.343.1447 (13)156
N4A—H4A⋯Cl2iii0.862.443.2265 (12)152
N4B—H4B⋯Cl20.862.213.0510 (13)166

Symmetry codes: (i) ; (ii) ; (iii) .

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4.  Bis(2-amino-3-carb-oxy-pyridinium) sulfate trihydrate.

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5.  2-Amino-3-carb-oxy-pyridinium nitrate.

Authors:  Fadila Berrah; Sofiane Bouacida; Thierry Roisnel
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