Literature DB >> 21523174

2-Amino-3-carb-oxy-pyrazin-1-ium nitrate monohydrate.

Fadila Berrah, Amira Ouakkaf, Sofiane Bouacida, Thierry Roisnel.   

Abstract

In crystal structure of the title compound, C(5)H(6)N(3)O(2) (+)·NO(3) (-)·H(2)O, inter-molecular N-H⋯O, O-H⋯N and O-H⋯O hydrogen bonds link the cations, anions and water mol-ecules into ribbons extending in [10]. Weak inter-molecular C-H⋯O hydrogen bonds further link these ribbons into sheets parallel to (3).

Entities:  

Year:  2011        PMID: 21523174      PMCID: PMC3051481          DOI: 10.1107/S1600536811003126

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For similar compounds, see: Berrah et al. (2005a ▶,b ▶); Bouacida et al. (2005, ▶ 2009 ▶); Dobson & Gerkin (1996 ▶). For hydrogen-bond graph-set motifs, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶).

Experimental

Crystal data

C5H6N3O2 +·NO3 −·H2O M = 220.15 Triclinic, a = 5.1277 (4) Å b = 7.6368 (6) Å c = 12.1571 (10) Å α = 97.872 (3)° β = 100.588 (3)° γ = 106.194 (3)° V = 440.37 (6) Å3 Z = 2 Mo Kα radiation μ = 0.15 mm−1 T = 150 K 0.58 × 0.49 × 0.42 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2002 ▶) T min = 0.773, T max = 0.938 5333 measured reflections 1967 independent reflections 1693 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.097 S = 1.03 1967 reflections 143 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.36 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SIR2002 (Burla et al., 2003 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick,2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and DIAMOND (Brandenburg & Berndt, 2001 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811003126/cv5043sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811003126/cv5043Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H6N3O2+·NO3·H2OZ = 2
Mr = 220.15F(000) = 228
Triclinic, P1Dx = 1.66 Mg m3
a = 5.1277 (4) ÅMo Kα radiation, λ = 0.71073 Å
b = 7.6368 (6) ÅCell parameters from 2815 reflections
c = 12.1571 (10) Åθ = 2.8–27.5°
α = 97.872 (3)°µ = 0.15 mm1
β = 100.588 (3)°T = 150 K
γ = 106.194 (3)°Prism, yellow
V = 440.37 (6) Å30.58 × 0.49 × 0.42 mm
Bruker APEXII diffractometer1693 reflections with I > 2σ(I)
graphiteRint = 0.028
CCD rotation images, thin slices scansθmax = 27.5°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2002)h = −6→6
Tmin = 0.773, Tmax = 0.938k = −9→9
5333 measured reflectionsl = −15→15
1967 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0451P)2 + 0.1681P] where P = (Fo2 + 2Fc2)/3
1967 reflections(Δ/σ)max < 0.001
143 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.3536 (3)0.81463 (18)0.56444 (11)0.0213 (3)
C20.5373 (3)0.93343 (17)0.67594 (11)0.0196 (3)
C30.5053 (3)1.11068 (18)0.71720 (11)0.0206 (3)
C40.8826 (3)1.14836 (19)0.87398 (11)0.0243 (3)
H4A1.00581.22180.94340.029*
C50.9034 (3)0.97938 (19)0.83049 (11)0.0239 (3)
H51.04200.93540.87020.029*
N10.4633 (3)1.60420 (16)0.88650 (10)0.0226 (3)
N20.3198 (3)1.18108 (16)0.66687 (11)0.0270 (3)
H2A0.31371.29050.69800.032*
H2B0.20191.11880.60210.032*
N30.6850 (2)1.20958 (15)0.81712 (10)0.0228 (3)
H30.67191.31810.84600.027*
N40.7294 (2)0.87393 (15)0.73168 (9)0.0219 (3)
O10.3992 (2)0.65591 (14)0.54062 (9)0.0303 (3)
H10.30040.59770.47590.045*
O20.1873 (2)0.86840 (14)0.50431 (9)0.0288 (3)
O30.4414 (2)1.75010 (14)0.93506 (9)0.0326 (3)
O40.6850 (2)1.56230 (14)0.91237 (9)0.0279 (3)
O50.2640 (2)1.49165 (15)0.80957 (9)0.0337 (3)
O1W0.8473 (3)0.53972 (18)0.65527 (11)0.0490 (4)
H1W0.979 (6)0.543 (4)0.704 (3)0.074*
H2W0.793 (6)0.637 (4)0.671 (2)0.074*
U11U22U33U12U13U23
C10.0231 (6)0.0211 (6)0.0170 (6)0.0071 (5)0.0009 (5)0.0001 (5)
C20.0215 (6)0.0196 (6)0.0156 (6)0.0051 (5)0.0021 (5)0.0017 (5)
C30.0209 (6)0.0205 (6)0.0174 (6)0.0035 (5)0.0043 (5)−0.0001 (5)
C40.0246 (7)0.0254 (7)0.0157 (6)0.0011 (5)0.0002 (5)0.0009 (5)
C50.0236 (7)0.0255 (7)0.0178 (6)0.0050 (5)−0.0014 (5)0.0029 (5)
N10.0265 (6)0.0208 (5)0.0185 (6)0.0066 (5)0.0036 (5)0.0014 (4)
N20.0284 (6)0.0234 (6)0.0255 (6)0.0119 (5)−0.0023 (5)−0.0038 (5)
N30.0253 (6)0.0195 (5)0.0189 (6)0.0049 (5)0.0017 (5)−0.0029 (4)
N40.0242 (6)0.0212 (5)0.0173 (6)0.0055 (5)0.0011 (4)0.0023 (4)
O10.0380 (6)0.0252 (5)0.0214 (5)0.0159 (4)−0.0088 (4)−0.0075 (4)
O20.0300 (5)0.0276 (5)0.0243 (5)0.0135 (4)−0.0071 (4)−0.0016 (4)
O30.0406 (6)0.0231 (5)0.0337 (6)0.0116 (5)0.0108 (5)−0.0023 (4)
O40.0256 (5)0.0275 (5)0.0250 (5)0.0093 (4)−0.0031 (4)−0.0030 (4)
O1W0.0619 (9)0.0472 (7)0.0308 (6)0.0396 (7)−0.0220 (6)−0.0188 (5)
O50.0284 (6)0.0316 (6)0.0316 (6)0.0109 (4)−0.0085 (4)−0.0070 (4)
C1—O21.2162 (17)C5—H50.9500
C1—O11.3017 (16)N1—O31.2314 (14)
C1—C21.5050 (18)N1—O41.2621 (15)
C2—N41.3132 (17)N1—O51.2635 (15)
C2—C31.4420 (17)N2—H2A0.8800
C3—N21.3150 (18)N2—H2B0.8800
C3—N31.3580 (17)N3—H30.8800
C4—N31.3488 (18)O1—H10.8400
C4—C51.3663 (19)O1W—H1W0.81 (3)
C4—H4A0.9500O1W—H2W0.88 (3)
C5—N41.3520 (17)
O2—C1—O1125.51 (12)C4—C5—H5119.6
O2—C1—C2121.65 (11)O3—N1—O4121.00 (12)
O1—C1—C2112.82 (12)O3—N1—O5120.97 (12)
N4—C2—C3121.68 (12)O4—N1—O5118.02 (11)
N4—C2—C1118.46 (11)C3—N2—H2A120.0
C3—C2—C1119.83 (12)C3—N2—H2B120.0
N2—C3—N3118.84 (12)H2A—N2—H2B120.0
N2—C3—C2125.70 (12)C4—N3—C3122.72 (11)
N3—C3—C2115.46 (12)C4—N3—H3118.6
N3—C4—C5119.16 (12)C3—N3—H3118.6
N3—C4—H4A120.4C2—N4—C5120.09 (11)
C5—C4—H4A120.4C1—O1—H1109.5
N4—C5—C4120.89 (13)H1W—O1W—H2W110 (3)
N4—C5—H5119.6
O2—C1—C2—N4−174.02 (13)N3—C4—C5—N40.1 (2)
O1—C1—C2—N44.43 (18)C5—C4—N3—C3−0.5 (2)
O2—C1—C2—C34.1 (2)N2—C3—N3—C4−179.55 (13)
O1—C1—C2—C3−177.47 (12)C2—C3—N3—C40.68 (19)
N4—C2—C3—N2179.80 (13)C3—C2—N4—C50.1 (2)
C1—C2—C3—N21.8 (2)C1—C2—N4—C5178.13 (12)
N4—C2—C3—N3−0.45 (19)C4—C5—N4—C20.1 (2)
C1—C2—C3—N3−178.48 (11)
D—H···AD—HH···AD···AD—H···A
O1—H1···O1Wi0.841.692.5233 (17)168
O1W—H1W···O5ii0.80 (3)1.93 (3)2.7152 (18)167 (3)
O1W—H2W···O10.88 (3)2.39 (3)2.8825 (19)116 (2)
O1W—H2W···N40.88 (3)1.99 (3)2.8566 (18)170 (2)
N2—H2A···O50.882.012.8549 (17)161
N2—H2B···O20.882.082.7163 (17)128
N2—H2B···O2iii0.882.202.9125 (18)137
N3—H3···O40.881.912.7825 (16)174
C4—H4A···O4iv0.952.243.1818 (17)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O1Wi0.841.692.5233 (17)168
O1W—H1W⋯O5ii0.80 (3)1.93 (3)2.7152 (18)167 (3)
O1W—H2W⋯O10.88 (3)2.39 (3)2.8825 (19)116 (2)
O1W—H2W⋯N40.88 (3)1.99 (3)2.8566 (18)170 (2)
N2—H2A⋯O50.882.012.8549 (17)161
N2—H2B⋯O20.882.082.7163 (17)128
N2—H2B⋯O2iii0.882.202.9125 (18)137
N3—H3⋯O40.881.912.7825 (16)174
C4—H4A⋯O4iv0.952.243.1818 (17)169

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
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2.  3-Aminopyrazine-2-carboxylic acid.

Authors:  A J Dobson; R E Gerkin
Journal:  Acta Crystallogr C       Date:  1996-06-15       Impact factor: 1.172

3.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

4.  3,4-Dimethyl-anilinium chloride monohydrate.

Authors:  Sofiane Bouacida; Ratiba Belhouas; Habiba Kechout; Hocine Merazig; Patricia Bénard-Rocherullé
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-28
  4 in total
  8 in total

1.  2-Amino-3-carb-oxy-pyrazin-1-ium perchlorate bis-(2-amino-pyrazin-1-ium-3-carboxyl-ate) monohydrate.

Authors:  Fadila Berrah; Sofiane Bouacida; Ahlem Bouhraoua; Thierry Roisnel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-12

2.  Bis(5-amino-3-carb-oxy-1H-1,2,4-triazol-4-ium) sulfate dihydrate.

Authors:  Amira Ouakkaf; Fadila Berrah; Sofiane Bouacida; Thierry Roisnel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-16

3.  Bis(2-amino-3-carb-oxy-pyridinium) sulfate trihydrate.

Authors:  Fadila Berrah; Amira Ouakkaf; Sofiane Bouacida; Thierry Roisnel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-23

4.  Bis(2-amino-3-carb-oxy-pyrazin-1-ium) sulfate dihydrate.

Authors:  Fadila Berrah; Amira Ouakkaf; Sofiane Bouacida; Thierry Roisnel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-23

5.  2-Amino-3-carb-oxy-pyrazin-1-ium dihydrogen phosphate.

Authors:  Fadila Berrah; Sofiane Bouacida; Thierry Roisnel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-14

6.  2-Amino-3-carb-oxy-pyridinium nitrate.

Authors:  Fadila Berrah; Sofiane Bouacida; Thierry Roisnel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-16

7.  2-Amino-3-carb-oxy-pyridinium chloride hemihydrate.

Authors:  Rafika Bouchene; Sofiane Bouacida; Fadila Berrah; Jean-Claude Daran
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-21

8.  5-Amino-3-carb-oxy-1H-1,2,4-triazol-4-ium nitrate monohydrate.

Authors:  Fadila Berrah; Rafika Bouchene; Sofiane Bouacida; Thierry Roisnel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-21
  8 in total

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