Literature DB >> 21754219

Bis(2-amino-3-carb-oxy-pyridinium) sulfate trihydrate.

Fadila Berrah, Amira Ouakkaf, Sofiane Bouacida, Thierry Roisnel.   

Abstract

In the title compound, 2C(6)H(7)N(2)O(2) (+)·SO(4) (2-)·3H(2)O, there are two independent cations which are connected into N-H⋯O hydrogen-bonded dimers. In the crystal, O-H⋯O hydrogen-bonded sulfate-water sheets run parallel to (001) and are linked into a three-dimensional network via inter-molecular N-H⋯O and O-H⋯O hydrogen bonds through the 2-amino-nicotinium dimers. Further stabilization is provided by weak inter-molecular C-H⋯O hydrogen bonds. R(4) (3)(10) and R(2) (2)(8) graph-set rings are observed. The crystal studied was an inversion twin with refined components of 0.45 (6) and 0.55 (6).

Entities:  

Year:  2011        PMID: 21754219      PMCID: PMC3099893          DOI: 10.1107/S1600536811010191

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related compounds, see: Athimoolam & Rajaram (2005 ▶); Berrah et al. (2005, ▶ 2011a ▶,b ▶); Dobson & Gerkin (1997 ▶); Giantsidis & Turnbull (2000 ▶); Pawlukojc et al. (2007 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶); Etter et al. (1990 ▶). For background to hydrogen bonding, see: Desiraju (2003 ▶).

Experimental

Crystal data

2C6H7N2O2 +·SO4 2−·3H2O M = 428.39 Orthorhombic, a = 6.5372 (5) Å b = 12.3141 (10) Å c = 23.0274 (19) Å V = 1853.7 (3) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 150 K 0.58 × 0.13 × 0.04 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2002 ▶) T min = 0.845, T max = 0.970 23588 measured reflections 4229 independent reflections 3669 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.079 S = 1.06 4229 reflections 274 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.28 e Å−3 Absolute structure: Flack (1983 ▶), 1790 Friedel pairs Flack parameter: 0.45 (6) Data collection: APEX2 (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SIR2002 (Burla et al., 2003 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and DIAMOND (Brandenburg & Berndt, 2001 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811010191/lh5219sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811010191/lh5219Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C6H7N2O2+·SO42·3H2ODx = 1.535 Mg m3
Mr = 428.39Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P212121Cell parameters from 8735 reflections
a = 6.5372 (5) Åθ = 2.4–27.2°
b = 12.3141 (10) ŵ = 0.24 mm1
c = 23.0274 (19) ÅT = 150 K
V = 1853.7 (3) Å3Needle, colourless
Z = 40.58 × 0.13 × 0.04 mm
F(000) = 896
Bruker APEXII diffractometer3669 reflections with I > 2σ(I)
graphiteRint = 0.042
CCD rotation images, thin slices scansθmax = 27.5°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 2002)h = −8→5
Tmin = 0.845, Tmax = 0.970k = −15→15
23588 measured reflectionsl = −29→29
4229 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.031H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.079w = 1/[σ2(Fo2) + (0.0369P)2 + 0.4264P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.001
4229 reflectionsΔρmax = 0.27 e Å3
274 parametersΔρmin = −0.28 e Å3
0 restraintsAbsolute structure: Flack (1983), 1790 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.45 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1A0.7166 (3)0.27959 (15)0.00318 (8)0.0216 (4)
C1B0.6471 (3)0.70977 (15)0.03679 (8)0.0200 (4)
C2A0.7181 (3)0.23143 (14)0.06245 (7)0.0207 (4)
C2B0.6478 (3)0.75822 (15)−0.02254 (7)0.0190 (4)
C3A0.7116 (3)0.29935 (14)0.11251 (7)0.0201 (3)
C3B0.6631 (3)0.68958 (14)−0.07242 (7)0.0190 (4)
C4A0.7238 (3)0.14018 (15)0.17195 (8)0.0263 (4)
H4A0.7260.11020.210.032*
C4B0.6481 (3)0.84839 (16)−0.13233 (8)0.0262 (4)
H4B0.64790.8782−0.17040.031*
C5A0.7264 (3)0.07309 (16)0.12519 (8)0.0312 (5)
H5A0.728−0.00360.12970.037*
C5B0.6322 (3)0.91558 (16)−0.08559 (8)0.0282 (4)
H5B0.62110.992−0.09040.034*
C6A0.7268 (3)0.12083 (16)0.07029 (9)0.0279 (4)
H6A0.73330.07520.03710.034*
C6B0.6326 (3)0.86880 (16)−0.03039 (8)0.0247 (4)
H6B0.62220.91450.00270.03*
N1A0.7020 (3)0.40640 (12)0.11129 (7)0.0278 (3)
H11A0.70.44340.1440.033*
H12A0.69760.44070.07780.033*
N1B0.6788 (3)0.58296 (12)−0.07142 (7)0.0270 (4)
H11B0.68940.5465−0.10410.032*
H12B0.67850.5482−0.0380.032*
N2A0.7181 (2)0.24906 (12)0.16507 (6)0.0215 (3)
H2A0.71870.28990.19640.026*
N2B0.6642 (2)0.73990 (13)−0.12524 (6)0.0225 (3)
H2B0.67610.6992−0.15650.027*
O10.7971 (2)0.35697 (10)0.26811 (5)0.0259 (3)
O1A0.7192 (2)0.20503 (10)−0.03781 (5)0.0294 (3)
H1A0.7140.2352−0.07050.044*
O1B0.6533 (2)0.78383 (10)0.07796 (5)0.0277 (3)
H1B0.63980.75380.11050.042*
O20.7597 (2)0.52317 (11)0.32163 (5)0.0311 (3)
O1W0.6295 (3)0.71875 (14)0.18121 (6)0.0467 (5)
H1W0.652 (5)0.765 (3)0.2061 (14)0.07*
H2W0.653 (5)0.664 (3)0.1933 (14)0.07*
O2A0.7137 (2)0.37665 (11)−0.00595 (5)0.0296 (3)
O2B0.6414 (2)0.61242 (10)0.04572 (5)0.0266 (3)
O30.9930 (2)0.51502 (12)0.24034 (6)0.0301 (3)
O2W0.3026 (2)0.36878 (11)0.23220 (6)0.0270 (3)
H3W0.201 (4)0.405 (2)0.2347 (11)0.04*
H4W0.405 (4)0.417 (2)0.2307 (11)0.04*
O40.6310 (2)0.50965 (11)0.22342 (5)0.0259 (3)
O3W0.2063 (3)0.23235 (12)0.14171 (6)0.0325 (3)
H5W0.239 (4)0.271 (2)0.1664 (11)0.049*
H6W0.227 (4)0.170 (2)0.1557 (11)0.049*
S10.79804 (7)0.47766 (4)0.263808 (18)0.01992 (10)
U11U22U33U12U13U23
C1A0.0196 (8)0.0255 (10)0.0197 (8)−0.0003 (8)−0.0009 (7)−0.0008 (7)
C1B0.0188 (9)0.0236 (10)0.0176 (8)0.0009 (7)−0.0004 (7)−0.0013 (7)
C2A0.0205 (9)0.0210 (9)0.0207 (8)−0.0023 (7)−0.0018 (7)−0.0009 (7)
C2B0.0192 (9)0.0212 (9)0.0165 (8)−0.0012 (7)−0.0016 (7)−0.0003 (7)
C3A0.0203 (8)0.0203 (8)0.0196 (8)−0.0009 (8)−0.0001 (8)0.0007 (7)
C3B0.0205 (9)0.0199 (9)0.0167 (8)0.0008 (7)−0.0006 (7)0.0007 (7)
C4A0.0318 (10)0.0239 (9)0.0232 (9)0.0002 (8)−0.0036 (8)0.0062 (8)
C4B0.0300 (11)0.0261 (10)0.0225 (9)0.0020 (8)−0.0008 (8)0.0081 (8)
C5A0.0451 (12)0.0192 (9)0.0293 (10)−0.0003 (9)−0.0034 (9)0.0025 (8)
C5B0.0336 (11)0.0214 (10)0.0294 (10)0.0018 (8)−0.0012 (8)0.0047 (8)
C6A0.0354 (11)0.0218 (9)0.0266 (10)0.0000 (8)−0.0017 (9)−0.0036 (8)
C6B0.0278 (10)0.0221 (9)0.0241 (9)0.0003 (8)−0.0007 (8)−0.0021 (8)
N1A0.0465 (9)0.0181 (8)0.0188 (7)0.0007 (8)−0.0003 (8)−0.0004 (6)
N1B0.0436 (10)0.0204 (8)0.0171 (7)0.0013 (8)−0.0001 (7)−0.0006 (6)
N2A0.0256 (8)0.0214 (7)0.0175 (7)0.0004 (7)−0.0014 (6)0.0000 (6)
N2B0.0270 (8)0.0243 (8)0.0162 (7)0.0004 (6)0.0004 (6)−0.0011 (6)
O10.0404 (7)0.0191 (6)0.0181 (6)−0.0016 (6)−0.0021 (6)0.0004 (5)
O1A0.0454 (8)0.0252 (7)0.0176 (6)0.0011 (7)−0.0006 (6)−0.0015 (5)
O1B0.0414 (8)0.0250 (7)0.0166 (6)0.0008 (6)−0.0005 (6)−0.0018 (5)
O20.0508 (9)0.0240 (7)0.0184 (6)0.0046 (6)0.0021 (6)−0.0021 (6)
O1W0.0970 (15)0.0245 (8)0.0185 (7)0.0102 (9)−0.0078 (8)−0.0008 (6)
O2A0.0453 (8)0.0226 (7)0.0208 (6)0.0020 (6)0.0017 (6)0.0026 (5)
O2B0.0363 (8)0.0224 (7)0.0212 (7)0.0017 (6)0.0004 (6)0.0031 (6)
O30.0274 (7)0.0295 (8)0.0332 (8)−0.0038 (6)0.0025 (6)0.0054 (7)
O2W0.0264 (7)0.0248 (7)0.0297 (7)−0.0016 (6)0.0013 (7)−0.0017 (6)
O40.0284 (7)0.0260 (7)0.0234 (7)−0.0015 (6)−0.0034 (5)0.0041 (6)
O3W0.0538 (9)0.0244 (8)0.0193 (7)−0.0026 (7)−0.0042 (7)−0.0014 (6)
S10.0259 (2)0.0184 (2)0.01552 (19)−0.00133 (19)−0.00044 (18)0.00021 (17)
C1A—O2A1.214 (2)C5B—C6B1.395 (3)
C1A—O1A1.317 (2)C5B—H5B0.95
C1A—C2A1.488 (2)C6A—H6A0.95
C1B—O2B1.217 (2)C6B—H6B0.95
C1B—O1B1.316 (2)N1A—H11A0.88
C1B—C2B1.491 (2)N1A—H12A0.88
C2A—C6A1.375 (3)N1B—H11B0.88
C2A—C3A1.425 (2)N1B—H12B0.88
C2B—C6B1.377 (3)N2A—H2A0.88
C2B—C3B1.430 (2)N2B—H2B0.88
C3A—N1A1.320 (2)O1—S11.4895 (13)
C3A—N2A1.360 (2)O1A—H1A0.84
C3B—N1B1.317 (2)O1B—H1B0.84
C3B—N2B1.365 (2)O2—S11.4662 (13)
C4A—N2A1.351 (2)O1W—H1W0.82 (3)
C4A—C5A1.357 (3)O1W—H2W0.75 (3)
C4A—H4A0.95O3—S11.4591 (14)
C4B—N2B1.350 (2)O2W—H3W0.80 (3)
C4B—C5B1.362 (3)O2W—H4W0.89 (3)
C4B—H4B0.95O4—S11.4877 (13)
C5A—C6A1.394 (3)O3W—H5W0.77 (3)
C5A—H5A0.95O3W—H6W0.85 (3)
O2A—C1A—O1A124.23 (16)C2A—C6A—C5A122.46 (18)
O2A—C1A—C2A123.47 (16)C2A—C6A—H6A118.8
O1A—C1A—C2A112.30 (15)C5A—C6A—H6A118.8
O2B—C1B—O1B124.18 (16)C2B—C6B—C5B121.86 (18)
O2B—C1B—C2B123.32 (16)C2B—C6B—H6B119.1
O1B—C1B—C2B112.51 (15)C5B—C6B—H6B119.1
C6A—C2A—C3A118.44 (16)C3A—N1A—H11A120
C6A—C2A—C1A121.03 (16)C3A—N1A—H12A120
C3A—C2A—C1A120.52 (15)H11A—N1A—H12A120
C6B—C2B—C3B118.95 (16)C3B—N1B—H11B120
C6B—C2B—C1B121.05 (16)C3B—N1B—H12B120
C3B—C2B—C1B120.00 (15)H11B—N1B—H12B120
N1A—C3A—N2A118.38 (15)C4A—N2A—C3A123.86 (15)
N1A—C3A—C2A124.77 (15)C4A—N2A—H2A118.1
N2A—C3A—C2A116.85 (15)C3A—N2A—H2A118.1
N1B—C3B—N2B117.89 (16)C4B—N2B—C3B123.82 (16)
N1B—C3B—C2B125.49 (15)C4B—N2B—H2B118.1
N2B—C3B—C2B116.61 (15)C3B—N2B—H2B118.1
N2A—C4A—C5A120.77 (17)C1A—O1A—H1A109.5
N2A—C4A—H4A119.6C1B—O1B—H1B109.5
C5A—C4A—H4A119.6H1W—O1W—H2W109 (3)
N2B—C4B—C5B120.77 (17)H3W—O2W—H4W105 (2)
N2B—C4B—H4B119.6H5W—O3W—H6W104 (3)
C5B—C4B—H4B119.6O3—S1—O2111.42 (9)
C4A—C5A—C6A117.56 (18)O3—S1—O4109.05 (8)
C4A—C5A—H5A121.2O2—S1—O4109.93 (8)
C6A—C5A—H5A121.2O3—S1—O1110.06 (9)
C4B—C5B—C6B117.98 (18)O2—S1—O1108.68 (7)
C4B—C5B—H5B121O4—S1—O1107.62 (8)
C6B—C5B—H5B121
O2A—C1A—C2A—C6A−178.3 (2)C1B—C2B—C3B—N2B−179.57 (16)
O1A—C1A—C2A—C6A1.6 (3)N2A—C4A—C5A—C6A1.1 (3)
O2A—C1A—C2A—C3A1.3 (3)N2B—C4B—C5B—C6B−0.1 (3)
O1A—C1A—C2A—C3A−178.75 (18)C3A—C2A—C6A—C5A1.0 (3)
O2B—C1B—C2B—C6B173.11 (18)C1A—C2A—C6A—C5A−179.38 (18)
O1B—C1B—C2B—C6B−6.9 (2)C4A—C5A—C6A—C2A−2.1 (3)
O2B—C1B—C2B—C3B−6.5 (3)C3B—C2B—C6B—C5B−0.1 (3)
O1B—C1B—C2B—C3B173.45 (16)C1B—C2B—C6B—C5B−179.72 (17)
C6A—C2A—C3A—N1A−179.65 (19)C4B—C5B—C6B—C2B−0.2 (3)
C1A—C2A—C3A—N1A0.7 (3)C5A—C4A—N2A—C3A1.0 (3)
C6A—C2A—C3A—N2A1.1 (3)N1A—C3A—N2A—C4A178.57 (18)
C1A—C2A—C3A—N2A−178.53 (16)C2A—C3A—N2A—C4A−2.1 (3)
C6B—C2B—C3B—N1B179.90 (18)C5B—C4B—N2B—C3B0.9 (3)
C1B—C2B—C3B—N1B−0.5 (3)N1B—C3B—N2B—C4B179.60 (18)
C6B—C2B—C3B—N2B0.8 (3)C2B—C3B—N2B—C4B−1.2 (3)
D—H···AD—HH···AD···AD—H···A
O1A—H1A···O3Wi0.841.692.5152 (18)167
O1B—H1B···O1W0.841.692.5138 (18)168
O1W—H1W···O2Wii0.82 (4)1.93 (3)2.754 (2)177 (4)
O3W—H5W···O2W0.77 (3)1.98 (3)2.750 (2)176 (3)
O1W—H2W···O40.75 (4)2.03 (4)2.752 (2)164 (3)
O2W—H3W···O3iii0.80 (3)1.92 (3)2.7151 (19)169 (3)
O2W—H4W···O40.90 (3)1.87 (3)2.7675 (19)175 (3)
O3W—H6W···O2iv0.84 (2)1.88 (2)2.720 (2)171 (3)
N2A—H2A···O10.881.922.7681 (18)163
N2B—H2B···O1v0.881.882.7419 (19)167
N1A—H11A···O40.882.052.915 (2)166
N1B—H11B···O2v0.881.942.817 (2)173
N1A—H12A···O2A0.882.092.726 (2)129
N1A—H12A···O2B0.882.272.979 (2)138
N1B—H12B···O2A0.882.252.963 (2)138
N1B—H12B···O2B0.882.102.733 (2)128
C4A—H4A···O3vi0.952.463.143 (2)129
C4B—H4B···O3vii0.952.313.169 (2)150
C6A—H6A···O1A0.952.352.697 (2)101
C6B—H6B···O1B0.952.372.709 (2)100
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1A—H1A⋯O3Wi0.841.692.5152 (18)167
O1B—H1B⋯O1W0.841.692.5138 (18)168
O1W—H1W⋯O2Wii0.82 (4)1.93 (3)2.754 (2)177 (4)
O3W—H5W⋯O2W0.77 (3)1.98 (3)2.750 (2)176 (3)
O1W—H2W⋯O40.75 (4)2.03 (4)2.752 (2)164 (3)
O2W—H3W⋯O3iii0.80 (3)1.92 (3)2.7151 (19)169 (3)
O2W—H4W⋯O40.90 (3)1.87 (3)2.7675 (19)175 (3)
O3W—H6W⋯O2iv0.84 (2)1.88 (2)2.720 (2)171 (3)
N2A—H2A⋯O10.881.922.7681 (18)163
N2B—H2B⋯O1v0.881.882.7419 (19)167
N1A—H11A⋯O40.882.052.915 (2)166
N1B—H11B⋯O2v0.881.942.817 (2)173
N1A—H12A⋯O2A0.882.092.726 (2)129
N1A—H12A⋯O2B0.882.272.979 (2)138
N1B—H12B⋯O2A0.882.252.963 (2)138
N1B—H12B⋯O2B0.882.102.733 (2)128
C4A—H4A⋯O3vi0.952.463.143 (2)129
C4B—H4B⋯O3vii0.952.313.169 (2)150

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

  6 in total

1.  6-aminonicotinic acid hydrochloride

Authors: 
Journal:  Acta Crystallogr C       Date:  2000-03       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

4.  2-Aminonicotinic acid.

Authors:  A J Dobson; R E Gerkin
Journal:  Acta Crystallogr C       Date:  1997-10-15       Impact factor: 1.172

5.  2-Amino-3-carb-oxy-pyrazin-1-ium nitrate monohydrate.

Authors:  Fadila Berrah; Amira Ouakkaf; Sofiane Bouacida; Thierry Roisnel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-29

6.  Bis(2-amino-3-carb-oxy-pyrazin-1-ium) sulfate dihydrate.

Authors:  Fadila Berrah; Amira Ouakkaf; Sofiane Bouacida; Thierry Roisnel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-23
  6 in total
  5 in total

1.  Bis(5-amino-3-carb-oxy-1H-1,2,4-triazol-4-ium) sulfate dihydrate.

Authors:  Amira Ouakkaf; Fadila Berrah; Sofiane Bouacida; Thierry Roisnel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-16

2.  2-Amino-3-carb-oxy-pyrazin-1-ium dihydrogen phosphate.

Authors:  Fadila Berrah; Sofiane Bouacida; Thierry Roisnel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-14

3.  2-Amino-3-carb-oxy-pyridinium nitrate.

Authors:  Fadila Berrah; Sofiane Bouacida; Thierry Roisnel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-16

4.  2-Amino-3-carb-oxy-pyridinium chloride hemihydrate.

Authors:  Rafika Bouchene; Sofiane Bouacida; Fadila Berrah; Jean-Claude Daran
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-21

5.  2-Amino-3-carb-oxy-pyridinium perchlorate.

Authors:  Fadila Berrah; Sofiane Bouacida; Hayet Anana; Thierry Roisnel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-02
  5 in total

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