Literature DB >> 22041062

Synthetase polyspecificity as a tool to modulate protein function.

Douglas D Young1, Steffen Jockush, Nicholas J Turro, Peter G Schultz.   

Abstract

The site-specific incorporation of unnatural amino acids (UAAs) into proteins in bacteria is made possible by the evolution of aminoacyl-tRNA synthetases that selectively recognize and aminoacylate the amino acid of interest. Recently we have discovered that some of the previously evolved aaRSs display a degree of polyspecificity and are capable of recognizing multiple UAAs. Herein we report the polyspecificity of an aaRS evolved to encode a comarin containing amino acid. This polyspecificity was then exploited to introduce several UAAs into the fluorophore of GFP, altering its photophysical properties.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 22041062      PMCID: PMC3783217          DOI: 10.1016/j.bmcl.2011.09.108

Source DB:  PubMed          Journal:  Bioorg Med Chem Lett        ISSN: 0960-894X            Impact factor:   2.823


  23 in total

1.  A genetically encoded fluorescent amino acid.

Authors:  Jiangyun Wang; Jianming Xie; Peter G Schultz
Journal:  J Am Chem Soc       Date:  2006-07-12       Impact factor: 15.419

2.  Genetic incorporation of unnatural amino acids into proteins in mammalian cells.

Authors:  Wenshe Liu; Ansgar Brock; Shuo Chen; Shuibing Chen; Peter G Schultz
Journal:  Nat Methods       Date:  2007-02-25       Impact factor: 28.547

3.  A genetically encoded photocaged tyrosine.

Authors:  Alexander Deiters; Dan Groff; Youngha Ryu; Jianming Xie; Peter G Schultz
Journal:  Angew Chem Int Ed Engl       Date:  2006-04-21       Impact factor: 15.336

4.  Evolution of a fluorinated green fluorescent protein.

Authors:  Tae Hyeon Yoo; A James Link; David A Tirrell
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-23       Impact factor: 11.205

5.  A genetically encoded infrared probe.

Authors:  Kathryn C Schultz; Lubica Supekova; Youngha Ryu; Jianming Xie; Roshan Perera; Peter G Schultz
Journal:  J Am Chem Soc       Date:  2006-11-01       Impact factor: 15.419

6.  Evolution of cyclic peptide protease inhibitors.

Authors:  Travis S Young; Douglas D Young; Insha Ahmad; John M Louis; Stephen J Benkovic; Peter G Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-20       Impact factor: 11.205

7.  Pyrrolysine analogues as substrates for pyrrolysyl-tRNA synthetase.

Authors:  Carla R Polycarpo; Stephanie Herring; Amélie Bérubé; John L Wood; Dieter Söll; Alexandre Ambrogelly
Journal:  FEBS Lett       Date:  2006-11-20       Impact factor: 4.124

8.  Adding amino acids with novel reactivity to the genetic code of Saccharomyces cerevisiae.

Authors:  Alexander Deiters; T Ashton Cropp; Mridul Mukherji; Jason W Chin; J Christopher Anderson; Peter G Schultz
Journal:  J Am Chem Soc       Date:  2003-10-01       Impact factor: 15.419

9.  An engineered Escherichia coli tyrosyl-tRNA synthetase for site-specific incorporation of an unnatural amino acid into proteins in eukaryotic translation and its application in a wheat germ cell-free system.

Authors:  Daisuke Kiga; Kensaku Sakamoto; Koichiro Kodama; Takanori Kigawa; Takayoshi Matsuda; Takashi Yabuki; Mikako Shirouzu; Yoko Harada; Hiroshi Nakayama; Koji Takio; Yoshinori Hasegawa; Yaeta Endo; Ichiro Hirao; Shigeyuki Yokoyama
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-03       Impact factor: 11.205

10.  Unnatural amino acid mutagenesis of green fluorescent protein.

Authors:  Lei Wang; Jianming Xie; Ashok A Deniz; Peter G Schultz
Journal:  J Org Chem       Date:  2003-01-10       Impact factor: 4.354

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  16 in total

Review 1.  Reprogramming the genetic code.

Authors:  Daniel de la Torre; Jason W Chin
Journal:  Nat Rev Genet       Date:  2020-12-14       Impact factor: 53.242

2.  Gleaning unexpected fruits from hard-won synthetases: probing principles of permissivity in non-canonical amino acid-tRNA synthetases.

Authors:  Richard B Cooley; P Andrew Karplus; Ryan A Mehl
Journal:  Chembiochem       Date:  2014-07-11       Impact factor: 3.164

3.  Electron-deficient p-benzoyl-l-phenylalanine derivatives increase covalent chemical capture yields for protein-protein interactions.

Authors:  Cassandra M Joiner; Meghan E Breen; Anna K Mapp
Journal:  Protein Sci       Date:  2019-04-29       Impact factor: 6.725

4.  Utilization of alkyne bioconjugations to modulate protein function.

Authors:  Johnathan C Maza; Christina A Howard; Megha A Vipani; Christopher R Travis; Douglas D Young
Journal:  Bioorg Med Chem Lett       Date:  2016-11-16       Impact factor: 2.823

5.  Synthesis and incorporation of a caged tyrosine amino acid possessing a bioorthogonal handle.

Authors:  Marshall S Padilla; Christopher A Farley; Lindsay E Chatkewitz; Douglas D Young
Journal:  Tetrahedron Lett       Date:  2016-09-10       Impact factor: 2.415

6.  Expanding the scope of alkyne-mediated bioconjugations utilizing unnatural amino acids.

Authors:  Johnathan C Maza; Zachary M Nimmo; Douglas D Young
Journal:  Chem Commun (Camb)       Date:  2016-01-04       Impact factor: 6.222

7.  Synthesis and Incorporation of Unnatural Amino Acids To Probe and Optimize Protein Bioconjugations.

Authors:  Johnathan C Maza; Jaclyn R McKenna; Benjamin K Raliski; Matthew T Freedman; Douglas D Young
Journal:  Bioconjug Chem       Date:  2015-08-21       Impact factor: 4.774

8.  Efficient synthesis and in vivo incorporation of acridon-2-ylalanine, a fluorescent amino acid for lifetime and Förster resonance energy transfer/luminescence resonance energy transfer studies.

Authors:  Lee C Speight; Anand K Muthusamy; Jacob M Goldberg; John B Warner; Rebecca F Wissner; Taylor S Willi; Bradley F Woodman; Ryan A Mehl; E James Petersson
Journal:  J Am Chem Soc       Date:  2013-12-04       Impact factor: 15.419

Review 9.  Playing with the Molecules of Life.

Authors:  Douglas D Young; Peter G Schultz
Journal:  ACS Chem Biol       Date:  2018-03-02       Impact factor: 5.100

10.  Structural and spectrophotometric investigation of two unnatural amino-acid altered chromophores in the superfolder green fluorescent protein.

Authors:  Gregory M Olenginski; Juliana Piacentini; Darcy R Harris; Nicolette A Runko; Brianna M Papoutsis; Jordan R Alter; Kenneth R Hess; Scott H Brewer; Christine M Phillips-Piro
Journal:  Acta Crystallogr D Struct Biol       Date:  2021-07-29       Impact factor: 5.699

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