Literature DB >> 22040801

Electron microscopy studies of nucleosome remodelers.

Andres E Leschziner1.   

Abstract

ATP-dependent chromatin remodeling complexes, or remodelers, are large protein assemblies that use the energy from ATP hydrolysis to non-covalently modify the structure of nucleosomes, playing a central role in the regulation of chromatin dynamics. Our understanding of the mechanism and regulation of this remodeling activity and the diversity of products that chromatin remodelers can generate remains limited, partly because very little structural data are available on these challenging samples. Electron microscopy (EM) and single-particle approaches have made inroads into the structural characterization of a number of remodeling complexes. Here I will review the work done to date, focusing on functional insights we have gained from these structures.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 22040801      PMCID: PMC3241934          DOI: 10.1016/j.sbi.2011.10.002

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  41 in total

1.  Evidence for DNA translocation by the ISWI chromatin-remodeling enzyme.

Authors:  Iestyn Whitehouse; Chris Stockdale; Andrew Flaus; Mark D Szczelkun; Tom Owen-Hughes
Journal:  Mol Cell Biol       Date:  2003-03       Impact factor: 4.272

2.  Structural analysis of the yeast SWI/SNF chromatin remodeling complex.

Authors:  Corey L Smith; Rachel Horowitz-Scherer; Joan F Flanagan; Christopher L Woodcock; Craig L Peterson
Journal:  Nat Struct Biol       Date:  2003-02

3.  Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome.

Authors:  Martin Zofall; Jim Persinger; Stefan R Kassabov; Blaine Bartholomew
Journal:  Nat Struct Mol Biol       Date:  2006-03-05       Impact factor: 15.369

4.  Histone tails modulate nucleosome mobility and regulate ATP-dependent nucleosome sliding by NURF.

Authors:  A Hamiche; J G Kang; C Dennis; H Xiao; C Wu
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-27       Impact factor: 11.205

5.  Analysis of nucleosome repositioning by yeast ISWI and Chd1 chromatin remodeling complexes.

Authors:  Chris Stockdale; Andrew Flaus; Helder Ferreira; Tom Owen-Hughes
Journal:  J Biol Chem       Date:  2006-04-10       Impact factor: 5.157

6.  Three-dimensional structure of human chromatin accessibility complex hCHRAC by electron microscopy.

Authors:  Minghui Hu; Yian-Biao Zhang; Luping Qian; Raymond P Briñas; Larisa Kuznetsova; James F Hainfeld
Journal:  J Struct Biol       Date:  2008-09-10       Impact factor: 2.867

7.  Five SWI/SNF gene products are components of a large multisubunit complex required for transcriptional enhancement.

Authors:  C L Peterson; A Dingwall; M P Scott
Journal:  Proc Natl Acad Sci U S A       Date:  1994-04-12       Impact factor: 11.205

8.  Architecture of the SWI/SNF-nucleosome complex.

Authors:  Mekonnen Lemma Dechassa; Bei Zhang; Rachel Horowitz-Scherer; Jim Persinger; Christopher L Woodcock; Craig L Peterson; Blaine Bartholomew
Journal:  Mol Cell Biol       Date:  2008-07-21       Impact factor: 4.272

9.  The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes.

Authors:  Lisa R Racki; Janet G Yang; Nariman Naber; Peretz D Partensky; Ashley Acevedo; Thomas J Purcell; Roger Cooke; Yifan Cheng; Geeta J Narlikar
Journal:  Nature       Date:  2009-12-24       Impact factor: 49.962

10.  Negative Staining and Image Classification - Powerful Tools in Modern Electron Microscopy.

Authors:  Melanie Ohi; Ying Li; Yifan Cheng; Thomas Walz
Journal:  Biol Proced Online       Date:  2004-03-19       Impact factor: 3.244

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  8 in total

1.  Proteins: histones and chromatin.

Authors:  Patrick Cramer; Cynthia Wolberger
Journal:  Curr Opin Struct Biol       Date:  2011-11-11       Impact factor: 6.809

2.  Computational study of remodeling in a nucleosomal array.

Authors:  Raoul D Schram; Henrike Klinker; Peter B Becker; Helmut Schiessel
Journal:  Eur Phys J E Soft Matter       Date:  2015-08-10       Impact factor: 1.890

3.  Coupling of replisome movement with nucleosome dynamics can contribute to the parent-daughter information transfer.

Authors:  Tripti Bameta; Dibyendu Das; Ranjith Padinhateeri
Journal:  Nucleic Acids Res       Date:  2018-06-01       Impact factor: 16.971

4.  Mechanism of chromatin remodelling revealed by the Snf2-nucleosome structure.

Authors:  Xiaoyu Liu; Meijing Li; Xian Xia; Xueming Li; Zhucheng Chen
Journal:  Nature       Date:  2017-04-19       Impact factor: 49.962

Review 5.  Swi2/Snf2 remodelers: hybrid views on hybrid molecular machines.

Authors:  Karl-Peter Hopfner; Christian-Benedikt Gerhold; Kristina Lakomek; Petra Wollmann
Journal:  Curr Opin Struct Biol       Date:  2012-03-23       Impact factor: 6.809

Review 6.  ATP-dependent chromatin remodeling complexes as novel targets for cancer therapy.

Authors:  Kimberly Mayes; Zhijun Qiu; Aiman Alhazmi; Joseph W Landry
Journal:  Adv Cancer Res       Date:  2014       Impact factor: 6.242

7.  Molecular architecture of the ATP-dependent chromatin-remodeling complex SWR1.

Authors:  Vu Q Nguyen; Anand Ranjan; Florian Stengel; Debbie Wei; Ruedi Aebersold; Carl Wu; Andres E Leschziner
Journal:  Cell       Date:  2013-09-12       Impact factor: 41.582

8.  Structure of the RSC complex bound to the nucleosome.

Authors:  Youpi Ye; Hao Wu; Kangjing Chen; Cedric R Clapier; Naveen Verma; Wenhao Zhang; Haiteng Deng; Bradley R Cairns; Ning Gao; Zhucheng Chen
Journal:  Science       Date:  2019-10-31       Impact factor: 47.728

  8 in total

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