Literature DB >> 18814851

Three-dimensional structure of human chromatin accessibility complex hCHRAC by electron microscopy.

Minghui Hu1, Yian-Biao Zhang, Luping Qian, Raymond P Briñas, Larisa Kuznetsova, James F Hainfeld.   

Abstract

ATP-dependent chromatin remodeling complexes modulate the dynamic assembly and remodeling of chromatin involved in DNA transcription, replication, and repair. There is little structural detail known about these important multiple-subunit enzymes that catalyze chromatin remodeling processes. Here we report a three-dimensional structure of the human chromatin accessibility complex, hCHRAC, using single particle reconstruction by negative stain electron microscopy. This structure shows an asymmetric 15x10x12nm disk shape with several lobes protruding out of its surfaces. Based on the factors of larger contact area, smaller steric hindrance, and direct involvement of hCHRAC in interactions with the nucleosome, we propose that four lobes on one side form a multiple-site contact surface 10nm in diameter for nucleosome binding. This work provides the first determination of the three-dimensional structure of the ISWI-family of chromatin remodeling complexes.

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Year:  2008        PMID: 18814851      PMCID: PMC2651197          DOI: 10.1016/j.jsb.2008.08.007

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  48 in total

1.  Spatial contacts and nucleosome step movements induced by the NURF chromatin remodeling complex.

Authors:  Ralf Schwanbeck; Hua Xiao; Carl Wu
Journal:  J Biol Chem       Date:  2004-07-15       Impact factor: 5.157

2.  The histone fold subunits of Drosophila CHRAC facilitate nucleosome sliding through dynamic DNA interactions.

Authors:  Klaus F Hartlepp; Carlos Fernández-Tornero; Anton Eberharter; Tim Grüne; Christoph W Müller; Peter B Becker
Journal:  Mol Cell Biol       Date:  2005-11       Impact factor: 4.272

3.  Structural studies of the human PBAF chromatin-remodeling complex.

Authors:  Andres E Leschziner; Bryan Lemon; Robert Tjian; Eva Nogales
Journal:  Structure       Date:  2005-02       Impact factor: 5.006

4.  Single particle reconstructions of the transferrin-transferrin receptor complex obtained with different specimen preparation techniques.

Authors:  Yifan Cheng; Elmar Wolf; Mykol Larvie; Olga Zak; Philip Aisen; Nikolaus Grigorieff; Stephen C Harrison; Thomas Walz
Journal:  J Mol Biol       Date:  2005-11-28       Impact factor: 5.469

5.  A 'loop recapture' mechanism for ACF-dependent nucleosome remodeling.

Authors:  Ralf Strohner; Malte Wachsmuth; Karoline Dachauer; Jacek Mazurkiewicz; Julia Hochstatter; Karsten Rippe; Gernot Längst
Journal:  Nat Struct Mol Biol       Date:  2005-07-17       Impact factor: 15.369

Review 6.  Chromatin remodelling: the industrial revolution of DNA around histones.

Authors:  Anjanabha Saha; Jacqueline Wittmeyer; Bradley R Cairns
Journal:  Nat Rev Mol Cell Biol       Date:  2006-06       Impact factor: 94.444

7.  Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF.

Authors:  Haitao Li; Serge Ilin; Wooikoon Wang; Elizabeth M Duncan; Joanna Wysocka; C David Allis; Dinshaw J Patel
Journal:  Nature       Date:  2006-05-21       Impact factor: 49.962

8.  Conformational flexibility in the chromatin remodeler RSC observed by electron microscopy and the orthogonal tilt reconstruction method.

Authors:  Andres E Leschziner; Anjanabha Saha; Jacqueline Wittmeyer; Yongli Zhang; Carlos Bustamante; Bradley R Cairns; Eva Nogales
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-13       Impact factor: 11.205

9.  Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome.

Authors:  Martin Zofall; Jim Persinger; Stefan R Kassabov; Blaine Bartholomew
Journal:  Nat Struct Mol Biol       Date:  2006-03-05       Impact factor: 15.369

10.  The Dpb4 subunit of ISW2 is anchored to extranucleosomal DNA.

Authors:  Weiwei Dang; Mohamedi N Kagalwala; Blaine Bartholomew
Journal:  J Biol Chem       Date:  2007-05-09       Impact factor: 5.157

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  3 in total

1.  Human ISWI chromatin-remodeling complexes sample nucleosomes via transient binding reactions and become immobilized at active sites.

Authors:  Fabian Erdel; Thomas Schubert; Caroline Marth; Gernot Längst; Karsten Rippe
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-25       Impact factor: 11.205

2.  Expansion of the ISWI chromatin remodeler family with new active complexes.

Authors:  Mariano Oppikofer; Tianyi Bai; Yutian Gan; Benjamin Haley; Peter Liu; Wendy Sandoval; Claudio Ciferri; Andrea G Cochran
Journal:  EMBO Rep       Date:  2017-08-11       Impact factor: 8.807

Review 3.  Electron microscopy studies of nucleosome remodelers.

Authors:  Andres E Leschziner
Journal:  Curr Opin Struct Biol       Date:  2011-10-29       Impact factor: 6.809

  3 in total

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