Literature DB >> 22445226

Swi2/Snf2 remodelers: hybrid views on hybrid molecular machines.

Karl-Peter Hopfner1, Christian-Benedikt Gerhold, Kristina Lakomek, Petra Wollmann.   

Abstract

Swi2/Snf2 (switch/sucrose non-fermentable) enzymes form a large and diverse class of proteins and multiprotein assemblies that remodel nucleic acid:protein complexes, using the energy of ATP hydrolysis. The core Swi2/Snf2 type ATPase domain belongs to the 'helicase and NTP driven nucleic acid translocase' superfamily 2 (SF2). It serves as a motor that functionally and structurally interacts with different targeting domains and functional modules to drive a plethora of remodeling activities in chromatin structure and dynamics, transcription regulation and DNA repair. Recent progress on the interaction of Swi2/Snf2 enzymes and multiprotein assemblies with their substrate nucleic acids and proteins, using hybrid structural biology methods, illuminates mechanisms for complex chemo-mechanical remodeling reactions. For Mot1, a hybrid mechanism of remodeler and chaperone emerged.
Copyright © 2012. Published by Elsevier Ltd.

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Year:  2012        PMID: 22445226      PMCID: PMC3323801          DOI: 10.1016/j.sbi.2012.02.007

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  52 in total

1.  Crystal structure and functional analysis of a nucleosome recognition module of the remodeling factor ISWI.

Authors:  Tim Grüne; Jan Brzeski; Anton Eberharter; Cedric R Clapier; Davide F V Corona; Peter B Becker; Christoph W Müller
Journal:  Mol Cell       Date:  2003-08       Impact factor: 17.970

2.  Structure of the SWI2/SNF2 chromatin-remodeling domain of eukaryotic Rad54.

Authors:  Nicolas H Thomä; Bryan K Czyzewski; Andrei A Alexeev; Alexander V Mazin; Stephen C Kowalczykowski; Nikola P Pavletich
Journal:  Nat Struct Mol Biol       Date:  2005-04-03       Impact factor: 15.369

3.  X-ray structures of the Sulfolobus solfataricus SWI2/SNF2 ATPase core and its complex with DNA.

Authors:  Harald Dürr; Christian Körner; Marisa Müller; Volker Hickmann; Karl-Peter Hopfner
Journal:  Cell       Date:  2005-05-06       Impact factor: 41.582

4.  A 'loop recapture' mechanism for ACF-dependent nucleosome remodeling.

Authors:  Ralf Strohner; Malte Wachsmuth; Karoline Dachauer; Jacek Mazurkiewicz; Julia Hochstatter; Karsten Rippe; Gernot Längst
Journal:  Nat Struct Mol Biol       Date:  2005-07-17       Impact factor: 15.369

5.  Double chromodomains cooperate to recognize the methylated histone H3 tail.

Authors:  John F Flanagan; Li-Zhi Mi; Maksymilian Chruszcz; Marcin Cymborowski; Katrina L Clines; Youngchang Kim; Wladek Minor; Fraydoon Rastinejad; Sepideh Khorasanizadeh
Journal:  Nature       Date:  2005-12-22       Impact factor: 49.962

6.  Mot1 activates and represses transcription by direct, ATPase-dependent mechanisms.

Authors:  Arindam Dasgupta; Russell P Darst; Karla J Martin; Cynthia A Afshari; David T Auble
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-05       Impact factor: 11.205

7.  The nuclear actin-related protein of Saccharomyces cerevisiae, Act3p/Arp4, interacts with core histones.

Authors:  M Harata; Y Oma; S Mizuno; Y W Jiang; D J Stillman; U Wintersberger
Journal:  Mol Biol Cell       Date:  1999-08       Impact factor: 4.138

Review 8.  Electron microscopy studies of nucleosome remodelers.

Authors:  Andres E Leschziner
Journal:  Curr Opin Struct Biol       Date:  2011-10-29       Impact factor: 6.809

9.  Involvement of actin-related proteins in ATP-dependent chromatin remodeling.

Authors:  Xuetong Shen; Ryan Ranallo; Eugene Choi; Carl Wu
Journal:  Mol Cell       Date:  2003-07       Impact factor: 17.970

10.  ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex.

Authors:  Gaku Mizuguchi; Xuetong Shen; Joe Landry; Wei-Hua Wu; Subhojit Sen; Carl Wu
Journal:  Science       Date:  2003-11-26       Impact factor: 47.728

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  39 in total

1.  Allosteric Activation of Bacterial Swi2/Snf2 (Switch/Sucrose Non-fermentable) Protein RapA by RNA Polymerase: BIOCHEMICAL AND STRUCTURAL STUDIES.

Authors:  Smita Kakar; Xianyang Fang; Lucyna Lubkowska; Yan Ning Zhou; Gary X Shaw; Yun-Xing Wang; Ding Jun Jin; Mikhail Kashlev; Xinhua Ji
Journal:  J Biol Chem       Date:  2015-08-13       Impact factor: 5.157

Review 2.  DNA Damage Repair in the Context of Plant Chromatin.

Authors:  Mattia Donà; Ortrun Mittelsten Scheid
Journal:  Plant Physiol       Date:  2015-06-18       Impact factor: 8.340

Review 3.  Macro domains as metabolite sensors on chromatin.

Authors:  Melanija Posavec; Gyula Timinszky; Marcus Buschbeck
Journal:  Cell Mol Life Sci       Date:  2013-03-03       Impact factor: 9.261

4.  Efficient detection of unpaired DNA requires a member of the rad54-like family of homologous recombination proteins.

Authors:  Dilini A Samarajeewa; Pegan A Sauls; Kevin J Sharp; Zachary J Smith; Hua Xiao; Katie M Groskreutz; Tyler L Malone; Erin C Boone; Kevin A Edwards; Patrick K T Shiu; Erik D Larson; Thomas M Hammond
Journal:  Genetics       Date:  2014-08-21       Impact factor: 4.562

Review 5.  Two-way communications between ubiquitin-like modifiers and DNA.

Authors:  Helle D Ulrich
Journal:  Nat Struct Mol Biol       Date:  2014-04       Impact factor: 15.369

6.  An ATPase-deficient variant of the SNF2 family member HELLS shows altered dynamics at pericentromeric heterochromatin.

Authors:  Cristiana Lungu; Kathrin Muegge; Albert Jeltsch; Renata Z Jurkowska
Journal:  J Mol Biol       Date:  2015-03-28       Impact factor: 5.469

Review 7.  Understanding nucleosome dynamics and their links to gene expression and DNA replication.

Authors:  William K M Lai; B Franklin Pugh
Journal:  Nat Rev Mol Cell Biol       Date:  2017-05-24       Impact factor: 94.444

8.  Rad54 functions as a heteroduplex DNA pump modulated by its DNA substrates and Rad51 during D loop formation.

Authors:  William Douglass Wright; Wolf-Dietrich Heyer
Journal:  Mol Cell       Date:  2014-01-30       Impact factor: 17.970

9.  Conformational changes and catalytic inefficiency associated with Mot1-mediated TBP-DNA dissociation.

Authors:  Gregor Heiss; Evelyn Ploetz; Lena Voith von Voithenberg; Ramya Viswanathan; Samson Glaser; Peter Schluesche; Sushi Madhira; Michael Meisterernst; David T Auble; Don C Lamb
Journal:  Nucleic Acids Res       Date:  2019-04-08       Impact factor: 16.971

Review 10.  Structure, function and regulation of CSB: a multi-talented gymnast.

Authors:  Robert J Lake; Hua-Ying Fan
Journal:  Mech Ageing Dev       Date:  2013-02-16       Impact factor: 5.432

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