Literature DB >> 35920752

15N-Detected TROSY NMR experiments to study large disordered proteins in high-field magnets.

Abhinav Dubey1,2, Thibault Viennet1,2, Sandeep Chhabra1,2, Koh Takeuchi3, Hee-Chan Seo1,4, Wolfgang Bermel5, Dominique P Frueh6, Haribabu Arthanari1,2.   

Abstract

Intrinsically disordered regions (IDRs) of proteins are critical in the regulation of biological processes but difficult to study structurally. Nuclear magnetic resonance (NMR) is uniquely equipped to provide structural information on IDRs at atomic resolution; however, existing NMR methods often pose a challenge for large molecular weight IDRs. Resonance assignment of IDRs using 15ND-detection was previously demonstrated and shown to overcome some of these limitations. Here, we improve the methodology by overcoming the need for deuterated buffers and provide better sensitivity and resolution at higher magnetic fields and physiological salt concentrations using transverse relaxation optimized spectroscopy (TROSY). Finally, large disordered regions with low sequence complexity can be assigned efficiently using these new methods as demonstrated by achieving near complete assignment of the 398-residue N-terminal IDR of the transcription factor NFAT1 harboring 18% prolines.

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Year:  2022        PMID: 35920752      PMCID: PMC9578535          DOI: 10.1039/d2cc02005j

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.065


  23 in total

1.  Speeding up sequence specific assignment of IDPs.

Authors:  Wolfgang Bermel; Ivano Bertini; Isabella C Felli; Leonardo Gonnelli; Wiktor Koźmiński; Alessandro Piai; Roberta Pierattelli; Jan Stanek
Journal:  J Biomol NMR       Date:  2012-06-10       Impact factor: 2.835

2.  Speeding up (13)C direct detection biomolecular NMR spectroscopy.

Authors:  Wolfgang Bermel; Ivano Bertini; Isabella C Felli; Roberta Pierattelli
Journal:  J Am Chem Soc       Date:  2009-10-28       Impact factor: 15.419

3.  15N detection harnesses the slow relaxation property of nitrogen: Delivering enhanced resolution for intrinsically disordered proteins.

Authors:  Sandeep Chhabra; Patrick Fischer; Koh Takeuchi; Abhinav Dubey; Joshua J Ziarek; Andras Boeszoermenyi; Daniel Mathieu; Wolfgang Bermel; Norman E Davey; Gerhard Wagner; Haribabu Arthanari
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-05       Impact factor: 11.205

4.  Identification of Dynamic Modes in an Intrinsically Disordered Protein Using Temperature-Dependent NMR Relaxation.

Authors:  Anton Abyzov; Nicola Salvi; Robert Schneider; Damien Maurin; Rob W H Ruigrok; Malene Ringkjøbing Jensen; Martin Blackledge
Journal:  J Am Chem Soc       Date:  2016-05-06       Impact factor: 15.419

5.  Speeding up direct (15)N detection: hCaN 2D NMR experiment.

Authors:  Maayan Gal; Katherine A Edmonds; Alexander G Milbradt; Koh Takeuchi; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2011-10-30       Impact factor: 2.835

Review 6.  Intrinsically disordered proteins in cellular signalling and regulation.

Authors:  Peter E Wright; H Jane Dyson
Journal:  Nat Rev Mol Cell Biol       Date:  2015-01       Impact factor: 94.444

7.  Perspective: revisiting the field dependence of TROSY sensitivity.

Authors:  Koh Takeuchi; Haribabu Arthanari; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2016-11-19       Impact factor: 2.835

Review 8.  NMR illuminates intrinsic disorder.

Authors:  H Jane Dyson; Peter E Wright
Journal:  Curr Opin Struct Biol       Date:  2021-05-02       Impact factor: 7.786

9.  Conserved allosteric ensembles in disordered proteins using TROSY/anti-TROSY R2-filtered spectroscopy.

Authors:  Emily M Grasso; Ananya Majumdar; James O Wrabl; Dominique P Frueh; Vincent J Hilser
Journal:  Biophys J       Date:  2021-04-24       Impact factor: 3.699

Review 10.  NMR Provides Unique Insight into the Functional Dynamics and Interactions of Intrinsically Disordered Proteins.

Authors:  Aldo R Camacho-Zarco; Vincent Schnapka; Serafima Guseva; Anton Abyzov; Wiktor Adamski; Sigrid Milles; Malene Ringkjøbing Jensen; Lukas Zidek; Nicola Salvi; Martin Blackledge
Journal:  Chem Rev       Date:  2022-04-21       Impact factor: 72.087

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