Literature DB >> 22013554

Covalent Anchor Positions Play an Important Role in Tuning Catalytic Properties of a Rationally Designed MnSalen-containing Metalloenzyme.

Dewain K Garner1, Lei Liang, David A Barrios, Jun-Long Zhang, Yi Lu.   

Abstract

Two questions important to the success in metalloenzyme design are how to attach or anchor metal cofactors inside protein scaffolds, and in what way such positioning affects enzymatic properties. We have previously reported a dual anchoring method to position a nonnative cofactor, MnSalen (1), inside the heme cavity of apo sperm whale myoglobin (Mb) and showed that the dual anchoring can increase both the activity and enantioselectivity over the single anchoring methods, making this artificial enzyme an ideal system to address the above questions. Here we report systematic investigations of the effect of different covalent attachment or anchoring positions on reactivity and selectivity of sulfoxidation by the MnSalen-containing Mb enzymes. We have found that changing the left anchor from Y103C to T39C has an almost identical effect of increasing rate by 1.8-fold and increasing selectivity by +14% for S, whether the right anchor is L72C or S108C. At the same time, regardless of the identity of the left anchor, changing the right anchor from S108C to L72C increases rate by 4-fold and selectivity by +66%. The right anchor site was observed to have a greater influence than the left anchor site on the reactivity and selectivity in sulfoxidation of a wide scope of other ortho-, meta- and para- substituted substrates. The 1•Mb(T39C/L72C) showed the highest reactivity (TON up to 2.31 min(-1)) and selectivity (ee% up to 83%) among the different anchoring positions examined. Molecular dynamic simulations indicate that these changes in reactivity and selectivity may be due to the steric effects of the linker arms inside the protein cavity. These results indicate that small differences in the anchor positions can result in significant changes in reactivity and enantioselectivity, probably through steric interactions with substrates when they enter the substrate-binding pocket, and that the effects of right and left anchor positions are independent and additive in nature. The finding that the anchoring arms can influence both the positioning of the cofactor and steric control of substrate entrance will help design better functional metalloenzymes with predicted catalytic activity and selectivity.

Entities:  

Year:  2011        PMID: 22013554      PMCID: PMC3194002          DOI: 10.1021/cs200258e

Source DB:  PubMed          Journal:  ACS Catal            Impact factor:   13.084


  56 in total

1.  A site-selective dual anchoring strategy for artificial metalloprotein design.

Authors:  James R Carey; Steven K Ma; Thomas D Pfister; Dewain K Garner; Hyeon K Kim; Joseph A Abramite; Zhilin Wang; Zijian Guo; Yi Lu
Journal:  J Am Chem Soc       Date:  2004-09-08       Impact factor: 15.419

2.  Protein scaffold of a designed metalloenzyme enhances the chemoselectivity in sulfoxidation of thioanisole.

Authors:  Jun-Long Zhang; Dewain K Garner; Lei Liang; Qian Chen; Yi Lu
Journal:  Chem Commun (Camb)       Date:  2008-02-04       Impact factor: 6.222

Review 3.  Supramolecular interactions between functional metal complexes and proteins.

Authors:  Catherine L Davies; Emma L Dux; Anne-K Duhme-Klair
Journal:  Dalton Trans       Date:  2009-11-02       Impact factor: 4.390

4.  Ligand migration in sperm whale myoglobin.

Authors:  E E Scott; Q H Gibson
Journal:  Biochemistry       Date:  1997-09-30       Impact factor: 3.162

5.  Preparation and initial characterization of the compound I, II, and III states of iron methylchlorin-reconstituted horseradish peroxidase and myoglobin: models for key intermediates in iron chlorin enzymes.

Authors:  E D Coulter; J Cheek; A P Ledbetter; C K Chang; J H Dawson
Journal:  Biochem Biophys Res Commun       Date:  2000-12-29       Impact factor: 3.575

6.  Cavities in proteins: structure of a metmyoglobin-xenon complex solved to 1.9 A.

Authors:  R F Tilton; I D Kuntz; G A Petsko
Journal:  Biochemistry       Date:  1984-06-19       Impact factor: 3.162

7.  Mapping the pathways for O2 entry into and exit from myoglobin.

Authors:  E E Scott; Q H Gibson; J S Olson
Journal:  J Biol Chem       Date:  2000-10-03       Impact factor: 5.157

8.  De novo design and molecular assembly of a transmembrane diporphyrin-binding protein complex.

Authors:  Ivan V Korendovych; Alessandro Senes; Yong Ho Kim; James D Lear; H Christopher Fry; Michael J Therien; J Kent Blasie; F Ann Walker; William F Degrado
Journal:  J Am Chem Soc       Date:  2010-11-10       Impact factor: 15.419

9.  Artificial metalloenzymes for enantioselective catalysis based on biotin-avidin.

Authors:  Jérôme Collot; Julieta Gradinaru; Nicolas Humbert; Myriem Skander; Andrea Zocchi; Thomas R Ward
Journal:  J Am Chem Soc       Date:  2003-07-30       Impact factor: 15.419

10.  Noncovalent modulation of pH-dependent reactivity of a Mn-salen cofactor in myoglobin with hydrogen peroxide.

Authors:  Jun-Long Zhang; Dewain K Garner; Lei Liang; David A Barrios; Yi Lu
Journal:  Chemistry       Date:  2009-07-27       Impact factor: 5.236

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  6 in total

1.  Designing functional metalloproteins: from structural to catalytic metal sites.

Authors:  Melissa L Zastrow; Vincent L Pecoraro
Journal:  Coord Chem Rev       Date:  2013-09       Impact factor: 22.315

Review 2.  Protein design: toward functional metalloenzymes.

Authors:  Fangting Yu; Virginia M Cangelosi; Melissa L Zastrow; Matteo Tegoni; Jefferson S Plegaria; Alison G Tebo; Catherine S Mocny; Leela Ruckthong; Hira Qayyum; Vincent L Pecoraro
Journal:  Chem Rev       Date:  2014-03-24       Impact factor: 60.622

Review 3.  Design and engineering of artificial oxygen-activating metalloenzymes.

Authors:  Flavia Nastri; Marco Chino; Ornella Maglio; Ambika Bhagi-Damodaran; Yi Lu; Angela Lombardi
Journal:  Chem Soc Rev       Date:  2016-06-24       Impact factor: 54.564

4.  Understanding and Modulating Metalloenzymes with Unnatural Amino Acids, Non-Native Metal Ions, and Non-Native Metallocofactors.

Authors:  Evan N Mirts; Ambika Bhagi-Damodaran; Yi Lu
Journal:  Acc Chem Res       Date:  2019-03-26       Impact factor: 22.384

5.  Corrole-protein interactions in H-NOX and HasA.

Authors:  Christopher M Lemon; Amos J Nissley; Naomi R Latorraca; Elizabeth C Wittenborn; Michael A Marletta
Journal:  RSC Chem Biol       Date:  2022-03-21

Review 6.  Metalloenzyme design and engineering through strategic modifications of native protein scaffolds.

Authors:  Igor D Petrik; Jing Liu; Yi Lu
Journal:  Curr Opin Chem Biol       Date:  2014-02-08       Impact factor: 8.822

  6 in total

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