Literature DB >> 24513641

Metalloenzyme design and engineering through strategic modifications of native protein scaffolds.

Igor D Petrik1, Jing Liu1, Yi Lu2.   

Abstract

Metalloenzymes are among the major targets of protein design and engineering efforts aimed at attaining novel and efficient catalysis for biochemical transformation and biomedical applications, due to the diversity of functions imparted by the metallo-cofactors along with the versatility of the protein environment. Naturally evolved protein scaffolds can often serve as robust foundations for sustaining artificial active sites constructed by rational design, directed evolution, or a combination of the two strategies. Accumulated knowledge of structure-function relationship and advancement of tools such as computational algorithms and unnatural amino acids incorporation all contribute to the design of better metalloenzymes with catalytic properties approaching the needs of practical applications.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 24513641      PMCID: PMC4008701          DOI: 10.1016/j.cbpa.2014.01.006

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  51 in total

1.  A site-selective dual anchoring strategy for artificial metalloprotein design.

Authors:  James R Carey; Steven K Ma; Thomas D Pfister; Dewain K Garner; Hyeon K Kim; Joseph A Abramite; Zhilin Wang; Zijian Guo; Yi Lu
Journal:  J Am Chem Soc       Date:  2004-09-08       Impact factor: 15.419

2.  Computational redesign of a mononuclear zinc metalloenzyme for organophosphate hydrolysis.

Authors:  Sagar D Khare; Yakov Kipnis; Per Greisen; Ryo Takeuchi; Yacov Ashani; Moshe Goldsmith; Yifan Song; Jasmine L Gallaher; Israel Silman; Haim Leader; Joel L Sussman; Barry L Stoddard; Dan S Tawfik; David Baker
Journal:  Nat Chem Biol       Date:  2012-02-05       Impact factor: 15.040

3.  A general strategy for the evolution of bond-forming enzymes using yeast display.

Authors:  Irwin Chen; Brent M Dorr; David R Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-22       Impact factor: 11.205

4.  Regio- and stereoselectivity of P450-catalysed hydroxylation of steroids controlled by laboratory evolution.

Authors:  Sabrina Kille; Felipe E Zilly; Juan P Acevedo; Manfred T Reetz
Journal:  Nat Chem       Date:  2011-08-14       Impact factor: 24.427

5.  Highly selective hydroxylation of benzene to phenol by wild-type cytochrome P450BM3 assisted by decoy molecules.

Authors:  Osami Shoji; Tatsuya Kunimatsu; Norifumi Kawakami; Yoshihito Watanabe
Journal:  Angew Chem Int Ed Engl       Date:  2013-05-06       Impact factor: 15.336

6.  Structural basis of biological N2O generation by bacterial nitric oxide reductase.

Authors:  Tomoya Hino; Yushi Matsumoto; Shingo Nagano; Hiroshi Sugimoto; Yoshihiro Fukumori; Takeshi Murata; So Iwata; Yoshitsugu Shiro
Journal:  Science       Date:  2010-11-25       Impact factor: 47.728

7.  Induced axial chirality in biocatalytic asymmetric ketone reduction.

Authors:  Rubén Agudo; Gheorghe-Doru Roiban; Manfred T Reetz
Journal:  J Am Chem Soc       Date:  2012-11-07       Impact factor: 15.419

8.  Cytochrome P450-Catalyzed Insertion of Carbenoids into N-H Bonds.

Authors:  Z Jane Wang; Nicole E Peck; Hans Renata; Frances H Arnold
Journal:  Chem Sci       Date:  2014-02-01       Impact factor: 9.825

9.  Chemoenzymatic elaboration of monosaccharides using engineered cytochrome P450BM3 demethylases.

Authors:  Jared C Lewis; Sabine Bastian; Clay S Bennett; Yu Fu; Yuuichi Mitsuda; Mike M Chen; William A Greenberg; Chi-Huey Wong; Frances H Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-15       Impact factor: 11.205

10.  Genetic incorporation of a metal-ion chelating amino acid into proteins as a biophysical probe.

Authors:  Hyun Soo Lee; Glen Spraggon; Peter G Schultz; Feng Wang
Journal:  J Am Chem Soc       Date:  2009-02-25       Impact factor: 15.419

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  26 in total

1.  Artificial Diiron Enzymes with a De Novo Designed Four-Helix Bundle Structure.

Authors:  Marco Chino; Ornella Maglio; Flavia Nastri; Vincenzo Pavone; William F DeGrado; Angela Lombardi
Journal:  Eur J Inorg Chem       Date:  2015-07-06       Impact factor: 2.524

2.  Change in structure and ligand binding properties of hyperstable cytochrome c555 from Aquifex aeolicus by domain swapping.

Authors:  Masaru Yamanaka; Satoshi Nagao; Hirofumi Komori; Yoshiki Higuchi; Shun Hirota
Journal:  Protein Sci       Date:  2015-01-14       Impact factor: 6.725

3.  Redesign of a Copper Storage Protein into an Artificial Hydrogenase.

Authors:  Dhanashree Selvan; Pallavi Prasad; Erik R Farquhar; Yelu Shi; Skyler Crane; Yong Zhang; Saumen Chakraborty
Journal:  ACS Catal       Date:  2019-05-16       Impact factor: 13.084

4.  An internal electron reservoir enhances catalytic CO2 reduction by a semisynthetic enzyme.

Authors:  Camille R Schneider; Hannah S Shafaat
Journal:  Chem Commun (Camb)       Date:  2016-08-02       Impact factor: 6.222

Review 5.  Design and engineering of artificial oxygen-activating metalloenzymes.

Authors:  Flavia Nastri; Marco Chino; Ornella Maglio; Ambika Bhagi-Damodaran; Yi Lu; Angela Lombardi
Journal:  Chem Soc Rev       Date:  2016-06-24       Impact factor: 54.564

6.  Insights Into How Heme Reduction Potentials Modulate Enzymatic Activities of a Myoglobin-based Functional Oxidase.

Authors:  Ambika Bhagi-Damodaran; Maximilian Kahle; Yelu Shi; Yong Zhang; Pia Ädelroth; Yi Lu
Journal:  Angew Chem Int Ed Engl       Date:  2017-05-04       Impact factor: 15.336

Review 7.  Computational strategies for the design of new enzymatic functions.

Authors:  K Świderek; I Tuñón; V Moliner; J Bertran
Journal:  Arch Biochem Biophys       Date:  2015-03-19       Impact factor: 4.013

8.  Peroxide Activation Regulated by Hydrogen Bonds within Artificial Cu Proteins.

Authors:  Samuel I Mann; Tillmann Heinisch; Thomas R Ward; A S Borovik
Journal:  J Am Chem Soc       Date:  2017-11-15       Impact factor: 15.419

9.  Coordination chemistry within a protein host: regulation of the secondary coordination sphere.

Authors:  Samuel I Mann; Tillmann Heinisch; Thomas R Ward; A S Borovik
Journal:  Chem Commun (Camb)       Date:  2018-04-26       Impact factor: 6.222

10.  Designed metalloprotein stabilizes a semiquinone radical.

Authors:  Gözde Ulas; Thomas Lemmin; Yibing Wu; George T Gassner; William F DeGrado
Journal:  Nat Chem       Date:  2016-02-15       Impact factor: 24.427

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