Literature DB >> 21981763

Activation of α-keto acid-dependent dioxygenases: application of an {FeNO}7/{FeO2}8 methodology for characterizing the initial steps of O2 activation.

Adrienne R Diebold1, Christina D Brown-Marshall, Michael L Neidig, June M Brownlee, Graham R Moran, Edward I Solomon.   

Abstract

The α-keto acid-dependent dioxygenases are a major subgroup within the O(2)-activating mononuclear nonheme iron enzymes. For these enzymes, the resting ferrous, the substrate plus cofactor-bound ferrous, and the Fe(IV)═O states of the reaction have been well studied. The initial O(2)-binding and activation steps are experimentally inaccessible and thus are not well understood. In this study, NO is used as an O(2) analogue to probe the effects of α-keto acid binding in 4-hydroxyphenylpyruvate dioxygenase (HPPD). A combination of EPR, UV-vis absorption, magnetic circular dichroism (MCD), and variable-temperature, variable-field (VTVH) MCD spectroscopies in conjunction with computational models is used to explore the HPPD-NO and HPPD-HPP-NO complexes. New spectroscopic features are present in the α-keto acid bound {FeNO}(7) site that reflect the strong donor interaction of the α-keto acid with the Fe. This promotes the transfer of charge from the Fe to NO. The calculations are extended to the O(2) reaction coordinate where the strong donation associated with the bound α-keto acid promotes formation of a new, S = 1 bridged Fe(IV)-peroxy species. These studies provide insight into the effects of a strong donor ligand on O(2) binding and activation by Fe(II) in the α-keto acid-dependent dioxygenases and are likely relevant to other subgroups of the O(2) activating nonheme ferrous enzymes.

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Year:  2011        PMID: 21981763      PMCID: PMC3212634          DOI: 10.1021/ja202549q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  35 in total

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Authors:  G Schaftenaar; J H Noordik
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2.  Geometric and electronic structure/function correlations in non-heme iron enzymes.

Authors:  E I Solomon; T C Brunold; M I Davis; J N Kemsley; S K Lee; N Lehnert; F Neese; A J Skulan; Y S Yang; J Zhou
Journal:  Chem Rev       Date:  2000-01-12       Impact factor: 60.622

3.  Structure of isopenicillin N synthase complexed with substrate and the mechanism of penicillin formation.

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Journal:  Nature       Date:  1997-06-19       Impact factor: 49.962

Review 4.  The 2-His-1-carboxylate facial triad: a versatile platform for dioxygen activation by mononuclear non-heme iron(II) enzymes.

Authors:  Kevin D Koehntop; Joseph P Emerson; Lawrence Que
Journal:  J Biol Inorg Chem       Date:  2005-03-01       Impact factor: 3.358

5.  Spectroscopic and electronic structure studies of aromatic electrophilic attack and hydrogen-atom abstraction by non-heme iron enzymes.

Authors:  Michael L Neidig; Andrea Decker; Oliver W Choroba; Fanglu Huang; Michael Kavana; Graham R Moran; Jonathan B Spencer; Edward I Solomon
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-18       Impact factor: 11.205

6.  MCD C-Term Signs, Saturation Behavior, and Determination of Band Polarizations in Randomly Oriented Systems with Spin S >/= (1)/(2). Applications to S = (1)/(2) and S = (5)/(2).

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Journal:  Inorg Chem       Date:  1999-04-19       Impact factor: 5.165

7.  (4-Hydroxyphenyl)pyruvate dioxygenase from Streptomyces avermitilis: the basis for ordered substrate addition.

Authors:  Kayunta Johnson-Winters; Vincent M Purpero; Michael Kavana; Tamara Nelson; Graham R Moran
Journal:  Biochemistry       Date:  2003-02-25       Impact factor: 3.162

8.  Mechanism of dioxygen activation in 2-oxoglutarate-dependent enzymes: a hybrid DFT study.

Authors:  Tomasz Borowski; Arianna Bassan; Per E M Siegbahn
Journal:  Chemistry       Date:  2004-02-20       Impact factor: 5.236

9.  4-Hydroxyphenylpyruvate dioxygenase: a hybrid density functional study of the catalytic reaction mechanism.

Authors:  Tomasz Borowski; Arianna Bassan; Per E M Siegbahn
Journal:  Biochemistry       Date:  2004-09-28       Impact factor: 3.162

10.  VTVH-MCD and DFT studies of thiolate bonding to [FeNO]7/[FeO2]8 complexes of isopenicillin N synthase: substrate determination of oxidase versus oxygenase activity in nonheme Fe enzymes.

Authors:  Christina D Brown; Michael L Neidig; Matthew B Neibergall; John D Lipscomb; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2007-05-17       Impact factor: 15.419

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  16 in total

Review 1.  Mono- and binuclear non-heme iron chemistry from a theoretical perspective.

Authors:  Tibor András Rokob; Jakub Chalupský; Daniel Bím; Prokopis C Andrikopoulos; Martin Srnec; Lubomír Rulíšek
Journal:  J Biol Inorg Chem       Date:  2016-05-26       Impact factor: 3.358

2.  L-Edge X-ray Absorption Spectroscopic Investigation of {FeNO}6: Delocalization vs Antiferromagnetic Coupling.

Authors:  James J Yan; Margarita A Gonzales; Pradip K Mascharak; Britt Hedman; Keith O Hodgson; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2017-01-11       Impact factor: 15.419

3.  O2 Activation by Non-Heme Iron Enzymes.

Authors:  Edward I Solomon; Serra Goudarzi; Kyle D Sutherlin
Journal:  Biochemistry       Date:  2016-11-14       Impact factor: 3.162

4.  Substrate Promotes Productive Gas Binding in the α-Ketoglutarate-Dependent Oxygenase FIH.

Authors:  Cornelius Y Taabazuing; Justin Fermann; Scott Garman; Michael J Knapp
Journal:  Biochemistry       Date:  2016-01-05       Impact factor: 3.162

5.  Geometric and electronic structure contributions to function in non-heme iron enzymes.

Authors:  Edward I Solomon; Kenneth M Light; Lei V Liu; Martin Srnec; Shaun D Wong
Journal:  Acc Chem Res       Date:  2013-09-26       Impact factor: 22.384

6.  Spectroscopic studies of the mononuclear non-heme Fe(II) enzyme FIH: second-sphere contributions to reactivity.

Authors:  Kenneth M Light; John A Hangasky; Michael J Knapp; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2013-06-20       Impact factor: 15.419

7.  Electronic structure analysis of the oxygen-activation mechanism by Fe(II)- and α-ketoglutarate (αKG)-dependent dioxygenases.

Authors:  Shengfa Ye; Christoph Riplinger; Andreas Hansen; Carsten Krebs; J Martin Bollinger; Frank Neese
Journal:  Chemistry       Date:  2012-04-18       Impact factor: 5.236

8.  Preparation of non-heme {FeNO}7 models of cysteine dioxygenase: sulfur versus nitrogen ligation and photorelease of nitric oxide.

Authors:  Alison C McQuilken; Yang Ha; Kyle D Sutherlin; Maxime A Siegler; Keith O Hodgson; Britt Hedman; Edward I Solomon; Guy N L Jameson; David P Goldberg
Journal:  J Am Chem Soc       Date:  2013-09-17       Impact factor: 15.419

Review 9.  Imposing function down a (cupin)-barrel: secondary structure and metal stereochemistry in the αKG-dependent oxygenases.

Authors:  John A Hangasky; Cornelius Y Taabazuing; Meaghan A Valliere; Michael J Knapp
Journal:  Metallomics       Date:  2013-04       Impact factor: 4.526

10.  Electronic Structure of the Ferryl Intermediate in the α-Ketoglutarate Dependent Non-Heme Iron Halogenase SyrB2: Contributions to H Atom Abstraction Reactivity.

Authors:  Martin Srnec; Shaun D Wong; Megan L Matthews; Carsten Krebs; J Martin Bollinger; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2016-04-12       Impact factor: 15.419

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