Literature DB >> 14978830

Mechanism of dioxygen activation in 2-oxoglutarate-dependent enzymes: a hybrid DFT study.

Tomasz Borowski1, Arianna Bassan, Per E M Siegbahn.   

Abstract

The reaction mechanism for dioxygen activation in 2-oxoglutarate-dependent enzymes has been studied by means of hybrid density functional theory. The results reported here support a mechanism in which all chemical transformations take place on a quintet potential-energy surface. More specifically, the activated dioxygen species attacks the carbonyl group of the co-substrate producing the Fe(II)-persuccinate-CO(2) complex, which readily releases the carbon dioxide molecule. The step in which the Fe(II)-peracid-CO(2) complex is formed is found to be rate-limiting and irreversible. Subsequent heterolysis of the Obond;O bond in the Fe(II)-persuccinate complex proceeds in two one-electron steps and produces the high-valent iron-oxo species Fe(IV)dbond;O, which is most likely to be responsible for oxidative reactions catalyzed by 2-oxoglutarate-dependent enzymes. The concerted pathway for simultaneous Obond;O and Cbond;C bond cleavage on the septet potential-energy surface is found to be less favorable. The relative stability of different forms of the active iron-oxo species is assessed, and the quintet five-coordinate complex is found to be most stable.

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Year:  2004        PMID: 14978830     DOI: 10.1002/chem.200305306

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  26 in total

Review 1.  Catalytic Mechanisms of Fe(II)- and 2-Oxoglutarate-dependent Oxygenases.

Authors:  Salette Martinez; Robert P Hausinger
Journal:  J Biol Chem       Date:  2015-07-07       Impact factor: 5.157

2.  Epoxidation Catalyzed by the Nonheme Iron(II)- and 2-Oxoglutarate-Dependent Oxygenase, AsqJ: Mechanistic Elucidation of Oxygen Atom Transfer by a Ferryl Intermediate.

Authors:  Jikun Li; Hsuan-Jen Liao; Yijie Tang; Jhih-Liang Huang; Lide Cha; Te-Sheng Lin; Justin L Lee; Igor V Kurnikov; Maria G Kurnikova; Wei-Chen Chang; Nei-Li Chan; Yisong Guo
Journal:  J Am Chem Soc       Date:  2020-03-16       Impact factor: 15.419

3.  Theoretical study of the mechanism of oxoiron(IV) formation from H2O2 and a nonheme iron(II) complex: O-O cleavage involving proton-coupled electron transfer.

Authors:  Hajime Hirao; Feifei Li; Lawrence Que; Keiji Morokuma
Journal:  Inorg Chem       Date:  2011-06-16       Impact factor: 5.165

4.  Activation of α-keto acid-dependent dioxygenases: application of an {FeNO}7/{FeO2}8 methodology for characterizing the initial steps of O2 activation.

Authors:  Adrienne R Diebold; Christina D Brown-Marshall; Michael L Neidig; June M Brownlee; Graham R Moran; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2011-10-21       Impact factor: 15.419

5.  Cryoreduction of the NO-adduct of taurine:alpha-ketoglutarate dioxygenase (TauD) yields an elusive {FeNO}(8) species.

Authors:  Shengfa Ye; John C Price; Eric W Barr; Michael T Green; J Martin Bollinger; Carsten Krebs; Frank Neese
Journal:  J Am Chem Soc       Date:  2010-04-07       Impact factor: 15.419

6.  Visualizing the Reaction Cycle in an Iron(II)- and 2-(Oxo)-glutarate-Dependent Hydroxylase.

Authors:  Andrew J Mitchell; Noah P Dunham; Ryan J Martinie; Jonathan A Bergman; Christopher J Pollock; Kai Hu; Benjamin D Allen; Wei-Chen Chang; Alexey Silakov; J Martin Bollinger; Carsten Krebs; Amie K Boal
Journal:  J Am Chem Soc       Date:  2017-09-20       Impact factor: 15.419

7.  Functional models of α-keto acid dependent nonheme iron oxygenases: synthesis and reactivity of biomimetic iron(II) benzoylformate complexes supported by a 2,9-dimethyl-1,10-phenanthroline ligand.

Authors:  Oindrila Das; Sayanti Chatterjee; Tapan Kanti Paine
Journal:  J Biol Inorg Chem       Date:  2013-02-16       Impact factor: 3.358

Review 8.  Spectroscopic analyses of 2-oxoglutarate-dependent oxygenases: TauD as a case study.

Authors:  Denis A Proshlyakov; John McCracken; Robert P Hausinger
Journal:  J Biol Inorg Chem       Date:  2016-11-03       Impact factor: 3.358

9.  Crystal structure of the non-heme iron dioxygenase PtlH in pentalenolactone biosynthesis.

Authors:  Zheng You; Satoshi Omura; Haruo Ikeda; David E Cane; Gerwald Jogl
Journal:  J Biol Chem       Date:  2007-10-16       Impact factor: 5.157

Review 10.  The oxo/peroxo debate: a nonheme iron perspective.

Authors:  Lawrence Que
Journal:  J Biol Inorg Chem       Date:  2004-08-05       Impact factor: 3.358

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