Literature DB >> 15379572

4-Hydroxyphenylpyruvate dioxygenase: a hybrid density functional study of the catalytic reaction mechanism.

Tomasz Borowski1, Arianna Bassan, Per E M Siegbahn.   

Abstract

Density functional calculations using the B3LYP functional has been used to study the reaction mechanism of 4-hydroxyphenylpyruvate dioxygenase. The first part of the catalytic reaction, dioxygen activation, is found to have the same mechanism as in alpha-ketoglutarate-dependent enzymes; the ternary enzyme-substrate-dioxygen complex is first decarboxylated to the iron(II)-peracid intermediate, followed by heterolytic cleavage of the O-O bond yielding an iron(IV)-oxo species. This highly reactive intermediate attacks the aromatic ring at the C1 position and forms a radical sigma complex, which can either form an arene oxide or undergo a C1-C2 side-chain migration. The arene oxide is found to have no catalytic relevance. The side-chain migration is a two-step process; the carbon-carbon bond cleavage first affords a biradical intermediate, followed by a decay of this species forming the new C-C bond. The ketone intermediate formed by a 1,2 shift of an acetic acid group rearomatizes either at the active site of the enzyme or in solution. The hypothetical oxidation of the aromatic ring at the C2 position was also studied to shed light on the 4-HPPD product specificity. In addition, the benzylic hydroxylation reaction, catalyzed by 4-hydroxymandelate synthase, was also studied. The results are in good agreement with the experimental findings.

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Year:  2004        PMID: 15379572     DOI: 10.1021/bi049503y

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  16 in total

1.  Theoretical study of the mechanism of oxoiron(IV) formation from H2O2 and a nonheme iron(II) complex: O-O cleavage involving proton-coupled electron transfer.

Authors:  Hajime Hirao; Feifei Li; Lawrence Que; Keiji Morokuma
Journal:  Inorg Chem       Date:  2011-06-16       Impact factor: 5.165

2.  Activation of α-keto acid-dependent dioxygenases: application of an {FeNO}7/{FeO2}8 methodology for characterizing the initial steps of O2 activation.

Authors:  Adrienne R Diebold; Christina D Brown-Marshall; Michael L Neidig; June M Brownlee; Graham R Moran; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2011-10-21       Impact factor: 15.419

3.  4-hydroxyphenylpyruvate dioxygenase catalysis: identification of catalytic residues and production of a hydroxylated intermediate shared with a structurally unrelated enzyme.

Authors:  Corinne Raspail; Matthieu Graindorge; Yohann Moreau; Serge Crouzy; Bertrand Lefèbvre; Adeline Y Robin; Renaud Dumas; Michel Matringe
Journal:  J Biol Chem       Date:  2011-05-25       Impact factor: 5.157

Review 4.  Mono- and binuclear non-heme iron chemistry from a theoretical perspective.

Authors:  Tibor András Rokob; Jakub Chalupský; Daniel Bím; Prokopis C Andrikopoulos; Martin Srnec; Lubomír Rulíšek
Journal:  J Biol Inorg Chem       Date:  2016-05-26       Impact factor: 3.358

Review 5.  Protein effects in non-heme iron enzyme catalysis: insights from multiscale models.

Authors:  Nathalie Proos Vedin; Marcus Lundberg
Journal:  J Biol Inorg Chem       Date:  2016-06-30       Impact factor: 3.358

6.  Spectroscopic and electronic structure studies of aromatic electrophilic attack and hydrogen-atom abstraction by non-heme iron enzymes.

Authors:  Michael L Neidig; Andrea Decker; Oliver W Choroba; Fanglu Huang; Michael Kavana; Graham R Moran; Jonathan B Spencer; Edward I Solomon
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-18       Impact factor: 11.205

Review 7.  Go it alone: four-electron oxidations by mononuclear non-heme iron enzymes.

Authors:  Spencer C Peck; Wilfred A van der Donk
Journal:  J Biol Inorg Chem       Date:  2016-10-25       Impact factor: 3.358

8.  Electronic structure analysis of the oxygen-activation mechanism by Fe(II)- and α-ketoglutarate (αKG)-dependent dioxygenases.

Authors:  Shengfa Ye; Christoph Riplinger; Andreas Hansen; Carsten Krebs; J Martin Bollinger; Frank Neese
Journal:  Chemistry       Date:  2012-04-18       Impact factor: 5.236

9.  Spectroscopic and quantum chemical studies on low-spin FeIV=O complexes: Fe-O bonding and its contributions to reactivity.

Authors:  Andrea Decker; Jan-Uwe Rohde; Eric J Klinker; Shaun D Wong; Lawrence Que; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2007-12-05       Impact factor: 15.419

Review 10.  The diverse and pervasive chemistries of the alpha-keto acid dependent enzymes.

Authors:  Vincent Purpero; Graham R Moran
Journal:  J Biol Inorg Chem       Date:  2007-04-13       Impact factor: 3.862

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