Literature DB >> 21956429

Prediction of high-valent iron K-edge absorption spectra by time-dependent density functional theory.

P Chandrasekaran1, S Chantal E Stieber, Terrence J Collins, Lawrence Que, Frank Neese, Serena DeBeer.   

Abstract

In recent years, a number of high-valent iron intermediates have been identified as reactive species in iron-containing metalloproteins. Inspired by the interest in these highly reactive species, chemists have synthesized Fe(IV) and Fe(V) model complexes with terminal oxo or nitrido groups, as well as a rare example of an Fe(VI)-nitrido species. In all these cases, X-ray absorption spectroscopy has played a key role in the identification and characterization of these species, with both the energy and intensity of the pre-edge features providing spectroscopic signatures for both the oxidation state and the local site geometry. Here we build on a time-dependent DFT methodology for the prediction of Fe K- pre-edge features, previously applied to ferrous and ferric complexes, and extend it to a range of Fe(IV), Fe(V) and Fe(VI) complexes. The contributions of oxidation state, coordination environment and spin state to the spectral features are discussed. These methods are then extended to calculate the spectra of the heme active site of P450 Compound II and the non-heme active site of TauD. The potential for using these methods in a predictive manner is highlighted.

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Year:  2011        PMID: 21956429      PMCID: PMC3242413          DOI: 10.1039/c1dt11331c

Source DB:  PubMed          Journal:  Dalton Trans        ISSN: 1477-9226            Impact factor:   4.390


  40 in total

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Authors: 
Journal:  Phys Rev Lett       Date:  1996-10-28       Impact factor: 9.161

2.  Heme-Containing Oxygenases.

Authors:  Masanori Sono; Mark P. Roach; Eric D. Coulter; John H. Dawson
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

3.  Cytochrome P450 compound I: capture, characterization, and C-H bond activation kinetics.

Authors:  Jonathan Rittle; Michael T Green
Journal:  Science       Date:  2010-11-12       Impact factor: 47.728

4.  The geometric and electronic structure of [(cyclam-acetato)Fe(N)]+: a genuine iron(v) species with a ground-state spin S = 1/2.

Authors:  Núria Aliaga-Alcalde; Serena DeBeer George; Bernd Mienert; Eckhard Bill; Karl Wieghardt; Frank Neese
Journal:  Angew Chem Int Ed Engl       Date:  2005-05-06       Impact factor: 15.336

Review 5.  Structure and chemistry of cytochrome P450.

Authors:  Ilia G Denisov; Thomas M Makris; Stephen G Sligar; Ilme Schlichting
Journal:  Chem Rev       Date:  2005-06       Impact factor: 60.622

6.  Semiempirical GGA-type density functional constructed with a long-range dispersion correction.

Authors:  Stefan Grimme
Journal:  J Comput Chem       Date:  2006-11-30       Impact factor: 3.376

7.  Chemical and spectroscopic evidence for an FeV-oxo complex.

Authors:  Filipe Tiago de Oliveira; Arani Chanda; Deboshri Banerjee; Xiaopeng Shan; Sujit Mondal; Lawrence Que; Emile L Bominaar; Eckard Münck; Terrence J Collins
Journal:  Science       Date:  2006-12-21       Impact factor: 47.728

8.  The crystal structure of a high-spin oxoiron(IV) complex and characterization of its self-decay pathway.

Authors:  Jason England; Yisong Guo; Erik R Farquhar; Victor G Young; Eckard Münck; Lawrence Que
Journal:  J Am Chem Soc       Date:  2010-06-30       Impact factor: 15.419

9.  X-ray crystal structure of Escherichia coli taurine/alpha-ketoglutarate dioxygenase complexed to ferrous iron and substrates.

Authors:  Jonathan M Elkins; Matthew J Ryle; Ian J Clifton; Julie C Dunning Hotopp; John S Lloyd; Nicolai I Burzlaff; Jack E Baldwin; Robert P Hausinger; Peter L Roach
Journal:  Biochemistry       Date:  2002-04-23       Impact factor: 3.162

10.  Calibration of scalar relativistic density functional theory for the calculation of sulfur K-edge X-ray absorption spectra.

Authors:  Serena Debeer George; Frank Neese
Journal:  Inorg Chem       Date:  2010-02-15       Impact factor: 5.165

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  26 in total

1.  Probing Cu(I) in homogeneous catalysis using high-energy-resolution fluorescence-detected X-ray absorption spectroscopy.

Authors:  Richard C Walroth; Jacob W H Uebler; Kyle M Lancaster
Journal:  Chem Commun (Camb)       Date:  2015-06-18       Impact factor: 6.222

Review 2.  Mono- and binuclear non-heme iron chemistry from a theoretical perspective.

Authors:  Tibor András Rokob; Jakub Chalupský; Daniel Bím; Prokopis C Andrikopoulos; Martin Srnec; Lubomír Rulíšek
Journal:  J Biol Inorg Chem       Date:  2016-05-26       Impact factor: 3.358

3.  Geometric and electronic structures of the His-Fe(IV)=O and His-Fe(IV)-Tyr hemes of MauG.

Authors:  Lyndal M R Jensen; Yergalem T Meharenna; Victor L Davidson; Thomas L Poulos; Britt Hedman; Carrie M Wilmot; Ritimukta Sarangi
Journal:  J Biol Inorg Chem       Date:  2012-09-30       Impact factor: 3.358

4.  Ligand Noninnocence in Iron Corroles: Insights from Optical and X-ray Absorption Spectroscopies and Electrochemical Redox Potentials.

Authors:  Sumit Ganguly; Logan J Giles; Kolle E Thomas; Ritimukta Sarangi; Abhik Ghosh
Journal:  Chemistry       Date:  2017-10-06       Impact factor: 5.236

5.  High-Energy-Resolution Fluorescence-Detected X-ray Absorption of the Q Intermediate of Soluble Methane Monooxygenase.

Authors:  Rebeca G Castillo; Rahul Banerjee; Caleb J Allpress; Gregory T Rohde; Eckhard Bill; Lawrence Que; John D Lipscomb; Serena DeBeer
Journal:  J Am Chem Soc       Date:  2017-12-01       Impact factor: 15.419

6.  Spectroscopic and Reactivity Comparisons of a Pair of bTAML Complexes with FeV═O and FeIV═O Units.

Authors:  Santanu Pattanayak; Andrew J Jasniewski; Atanu Rana; Apparao Draksharapu; Kundan K Singh; Andrew Weitz; Michael Hendrich; Lawrence Que; Abhishek Dey; Sayam Sen Gupta
Journal:  Inorg Chem       Date:  2017-05-08       Impact factor: 5.165

7.  X-ray absorption near-edge spectroscopy in bioinorganic chemistry: Application to M-O2 systems.

Authors:  Ritimukta Sarangi
Journal:  Coord Chem Rev       Date:  2012-07-03       Impact factor: 22.315

8.  Oxidative addition of carbon-carbon bonds with a redox-active bis(imino)pyridine iron complex.

Authors:  Jonathan M Darmon; S Chantal E Stieber; Kevin T Sylvester; Ignacio Fernández; Emil Lobkovsky; Scott P Semproni; Eckhard Bill; Karl Wieghardt; Serena DeBeer; Paul J Chirik
Journal:  J Am Chem Soc       Date:  2012-10-08       Impact factor: 15.419

9.  Catalytic hydrogenation activity and electronic structure determination of bis(arylimidazol-2-ylidene)pyridine cobalt alkyl and hydride complexes.

Authors:  Renyuan Pony Yu; Jonathan M Darmon; Carsten Milsmann; Grant W Margulieux; S Chantal E Stieber; Serena DeBeer; Paul J Chirik
Journal:  J Am Chem Soc       Date:  2013-08-22       Impact factor: 15.419

10.  Sensitivity of X-ray core spectroscopy to changes in metal ligation: a systematic study of low-coordinate, high-spin ferrous complexes.

Authors:  P Chandrasekaran; Karen P Chiang; Dennis Nordlund; Uwe Bergmann; Patrick L Holland; Serena DeBeer
Journal:  Inorg Chem       Date:  2013-05-10       Impact factor: 5.165

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