Literature DB >> 29136468

High-Energy-Resolution Fluorescence-Detected X-ray Absorption of the Q Intermediate of Soluble Methane Monooxygenase.

Rebeca G Castillo1, Rahul Banerjee, Caleb J Allpress, Gregory T Rohde, Eckhard Bill1, Lawrence Que, John D Lipscomb, Serena DeBeer1.   

Abstract

Kα high-energy-resolution fluorescence detected X-ray absorption spectroscopy (HERFD XAS) provides a powerful tool for overcoming the limitations of conventional XAS to identify the electronic structure and coordination environment of metalloprotein active sites. Herein, Fe Kα HERFD XAS is applied to the diiron active site of soluble methane monooxygenase (sMMO) and to a series of high-valent diiron model complexes, including diamond-core [FeIV2(μ-O)2(L)2](ClO4)4] (3) and open-core [(O═FeIV-O-FeIV(OH)(L)2](ClO4)3 (4) models (where, L = tris(3,5-dimethyl-4-methoxypyridyl-2-methyl)amine) (TPA*)). Pronounced differences in the HERFD XAS pre-edge energies and intensities are observed for the open versus closed Fe2O2 cores in the model compounds. These differences are reproduced by time-dependent density functional theory (TDDFT) calculations and allow for the pre-edge energies and intensity to be directly correlated with the local active site geometric and electronic structure. A comparison of the model complex HERFD XAS data to that of MMOHQ (the key intermediate in methane oxidation) is supportive of an open-core structure. Specifically, the large pre-edge area observed for MMOHQ may be rationalized by invoking an open-core structure with a terminal FeIV═O motif, though further modulations of the core structure due to the protein environment cannot be ruled out. The present study thus motivates the need for additional experimental and theoretical studies to unambiguously assess the active site conformation of MMOHQ.

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Year:  2017        PMID: 29136468      PMCID: PMC5729100          DOI: 10.1021/jacs.7b09560

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  41 in total

1.  Dioxygen Activation by Enzymes Containing Binuclear Non-Heme Iron Clusters.

Authors:  Bradley J. Wallar; John D. Lipscomb
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

Review 2.  Finding intermediates in the O2 activation pathways of non-heme iron oxygenases.

Authors:  E G Kovaleva; M B Neibergall; S Chakrabarty; J D Lipscomb
Journal:  Acc Chem Res       Date:  2007-06-14       Impact factor: 22.384

3.  Evaluating the identity and diiron core transformations of a (μ-oxo)diiron(III) complex supported by electron-rich tris(pyridyl-2-methyl)amine ligands.

Authors:  Loi H Do; Genqiang Xue; Lawrence Que; Stephen J Lippard
Journal:  Inorg Chem       Date:  2012-01-20       Impact factor: 5.165

4.  Crystal structure of a bacterial non-haem iron hydroxylase that catalyses the biological oxidation of methane.

Authors:  A C Rosenzweig; C A Frederick; S J Lippard; P Nordlund
Journal:  Nature       Date:  1993-12-09       Impact factor: 49.962

5.  Crystal structures of the soluble methane monooxygenase hydroxylase from Methylococcus capsulatus (Bath) demonstrating geometrical variability at the dinuclear iron active site.

Authors:  D A Whittington; S J Lippard
Journal:  J Am Chem Soc       Date:  2001-02-07       Impact factor: 15.419

6.  Theoretical Model Studies of the Iron Dimer Complex of MMO and RNR.

Authors:  Per E. M. Siegbahn
Journal:  Inorg Chem       Date:  1999-06-14       Impact factor: 5.165

Review 7.  Dioxygen activation in soluble methane monooxygenase.

Authors:  Christine E Tinberg; Stephen J Lippard
Journal:  Acc Chem Res       Date:  2011-03-10       Impact factor: 22.384

8.  Biochemistry: Breaking methane.

Authors:  Amy C Rosenzweig
Journal:  Nature       Date:  2015-01-21       Impact factor: 49.962

9.  Intermediate P* from soluble methane monooxygenase contains a diferrous cluster.

Authors:  Rahul Banerjee; Katlyn K Meier; Eckard Münck; John D Lipscomb
Journal:  Biochemistry       Date:  2013-06-13       Impact factor: 3.162

10.  DFT study of the mechanism for methane hydroxylation by soluble methane monooxygenase (sMMO): effects of oxidation state, spin state, and coordination number.

Authors:  Shu-Ping Huang; Yoshihito Shiota; Kazunari Yoshizawa
Journal:  Dalton Trans       Date:  2013-01-28       Impact factor: 4.390

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  26 in total

1.  High-Resolution Extended X-ray Absorption Fine Structure Analysis Provides Evidence for a Longer Fe···Fe Distance in the Q Intermediate of Methane Monooxygenase.

Authors:  George E Cutsail; Rahul Banerjee; Ang Zhou; Lawrence Que; John D Lipscomb; Serena DeBeer
Journal:  J Am Chem Soc       Date:  2018-11-16       Impact factor: 15.419

Review 2.  Dioxygen Activation by Nonheme Diiron Enzymes: Diverse Dioxygen Adducts, High-Valent Intermediates, and Related Model Complexes.

Authors:  Andrew J Jasniewski; Lawrence Que
Journal:  Chem Rev       Date:  2018-02-05       Impact factor: 60.622

3.  Copper(II) Binding to PBT2 Differs from That of Other 8-Hydroxyquinoline Chelators: Implications for the Treatment of Neurodegenerative Protein Misfolding Diseases.

Authors:  Kelly L Summers; Graham P Roseman; George J Sopasis; Glenn L Millhauser; Hugh H Harris; Ingrid J Pickering; Graham N George
Journal:  Inorg Chem       Date:  2020-11-23       Impact factor: 5.165

4.  Sizing up a supercharged ferryl.

Authors:  Kyle M Lancaster
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-16       Impact factor: 11.205

5.  Opening the CoIII,IV2(μ-O)2 Diamond Core by Lewis Bases Leads to Enhanced C-H Bond Cleaving Reactivity.

Authors:  Yan Li; Suhashini Handunneththige; Jin Xiong; Yisong Guo; Marat R Talipov; Dong Wang
Journal:  J Am Chem Soc       Date:  2020-12-16       Impact factor: 15.419

6.  High-Resolution XFEL Structure of the Soluble Methane Monooxygenase Hydroxylase Complex with its Regulatory Component at Ambient Temperature in Two Oxidation States.

Authors:  Vivek Srinivas; Rahul Banerjee; Hugo Lebrette; Jason C Jones; Oskar Aurelius; In-Sik Kim; Cindy C Pham; Sheraz Gul; Kyle D Sutherlin; Asmit Bhowmick; Juliane John; Esra Bozkurt; Thomas Fransson; Pierre Aller; Agata Butryn; Isabel Bogacz; Philipp Simon; Stephen Keable; Alexander Britz; Kensuke Tono; Kyung Sook Kim; Sang-Youn Park; Sang Jae Lee; Jaehyun Park; Roberto Alonso-Mori; Franklin D Fuller; Alexander Batyuk; Aaron S Brewster; Uwe Bergmann; Nicholas K Sauter; Allen M Orville; Vittal K Yachandra; Junko Yano; John D Lipscomb; Jan Kern; Martin Högbom
Journal:  J Am Chem Soc       Date:  2020-08-05       Impact factor: 15.419

7.  CeIV - and HClO4 -Promoted Assembly of an Fe2 IV (μ-O)2 Diamond Core from its Monomeric FeIV =O Precursor at Room Temperature.

Authors:  Apparao Draksharapu; Shuangning Xu; Lawrence Que
Journal:  Angew Chem Int Ed Engl       Date:  2020-10-06       Impact factor: 15.336

8.  Structural Studies of the Methylosinus trichosporium OB3b Soluble Methane Monooxygenase Hydroxylase and Regulatory Component Complex Reveal a Transient Substrate Tunnel.

Authors:  Jason C Jones; Rahul Banerjee; Ke Shi; Hideki Aihara; John D Lipscomb
Journal:  Biochemistry       Date:  2020-07-30       Impact factor: 3.162

9.  Highly Reactive CoIII,IV2(μ-O)2 Diamond Core Complex That Cleaves C-H Bonds.

Authors:  Yan Li; Suhashini Handunneththige; Erik R Farquhar; Yisong Guo; Marat R Talipov; Feifei Li; Dong Wang
Journal:  J Am Chem Soc       Date:  2019-12-16       Impact factor: 15.419

10.  High-resolution iron X-ray absorption spectroscopic and computational studies of non-heme diiron peroxo intermediates.

Authors:  George E Cutsail; Elizabeth J Blaesi; Christopher J Pollock; J Martin Bollinger; Carsten Krebs; Serena DeBeer
Journal:  J Inorg Biochem       Date:  2019-10-22       Impact factor: 4.155

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