Literature DB >> 11955067

X-ray crystal structure of Escherichia coli taurine/alpha-ketoglutarate dioxygenase complexed to ferrous iron and substrates.

Jonathan M Elkins1, Matthew J Ryle, Ian J Clifton, Julie C Dunning Hotopp, John S Lloyd, Nicolai I Burzlaff, Jack E Baldwin, Robert P Hausinger, Peter L Roach.   

Abstract

Taurine/alpha-ketoglutarate dioxygenase (TauD), a non-heme Fe(II) oxygenase, catalyses the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrent with the conversion of alpha-ketoglutarate (alphaKG) to succinate and CO(2). The enzyme allows Escherichia coli to use taurine, widely available in the environment, as an alternative sulfur source. Here we describe the X-ray crystal structure of TauD complexed to Fe(II) and both substrates, alphaKG and taurine. The tertiary structure and fold of TauD are similar to those observed in other enzymes from the broad family of Fe(II)/alphaKG-dependent oxygenases, with closest structural similarity to clavaminate synthase. Using the TauD coordinates, a model was determined for the closely related enzyme 2,4-dichlorophenoxyacetate/alphaKG dioxygenase (TfdA), supporting predictions derived from site-directed mutagenesis and other studies of that biodegradative protein. The TauD structure and TfdA model define the metal ligands and the positions of nearby aromatic residues that undergo post-translational modifications involving self-hydroxylation reactions. The substrate binding residues of TauD were identified and those of TfdA predicted. These results, along with sequence alignment information, reveal how TauD selects a tetrahedral substrate anion in preference to the planar carboxylate selected by TfdA, providing insight into the mechanism of enzyme catalysis.

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Year:  2002        PMID: 11955067     DOI: 10.1021/bi016014e

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  67 in total

1.  Localization and characterization of two novel genes encoding stereospecific dioxygenases catalyzing 2(2,4-dichlorophenoxy)propionate cleavage in Delftia acidovorans MC1.

Authors:  Kathleen M Schleinitz; Sabine Kleinsteuber; Tatiana Vallaeys; Wolfgang Babel
Journal:  Appl Environ Microbiol       Date:  2004-09       Impact factor: 4.792

2.  Prediction of high-valent iron K-edge absorption spectra by time-dependent density functional theory.

Authors:  P Chandrasekaran; S Chantal E Stieber; Terrence J Collins; Lawrence Que; Frank Neese; Serena DeBeer
Journal:  Dalton Trans       Date:  2011-09-29       Impact factor: 4.390

3.  Calorimetric assessment of Fe(2+) binding to α-ketoglutarate/taurine dioxygenase: ironing out the energetics of metal coordination by the 2-His-1-carboxylate facial triad.

Authors:  Kate L Henderson; Tina A Müller; Robert P Hausinger; Joseph P Emerson
Journal:  Inorg Chem       Date:  2015-02-10       Impact factor: 5.165

4.  Self-hydroxylation of taurine/alpha-ketoglutarate dioxygenase: evidence for more than one oxygen activation mechanism.

Authors:  Kevin D Koehntop; Sudha Marimanikkuppam; Matthew J Ryle; Robert P Hausinger; Lawrence Que
Journal:  J Biol Inorg Chem       Date:  2005-12-01       Impact factor: 3.358

Review 5.  Catalytic Mechanisms of Fe(II)- and 2-Oxoglutarate-dependent Oxygenases.

Authors:  Salette Martinez; Robert P Hausinger
Journal:  J Biol Chem       Date:  2015-07-07       Impact factor: 5.157

6.  Modular behavior of tauD provides insight into the origin of specificity in alpha-ketoglutarate-dependent nonheme iron oxygenases.

Authors:  Kevin P McCusker; Judith P Klinman
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-05       Impact factor: 11.205

7.  Interconversion of two oxidized forms of taurine/alpha-ketoglutarate dioxygenase, a non-heme iron hydroxylase: evidence for bicarbonate binding.

Authors:  Matthew J Ryle; Kevin D Koehntop; Aimin Liu; Lawrence Que; Robert P Hausinger
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-17       Impact factor: 11.205

8.  Isonitrile Formation by a Non-Heme Iron(II)-Dependent Oxidase/Decarboxylase.

Authors:  Nicholas C Harris; David A Born; Wenlong Cai; Yaobing Huang; Joelle Martin; Ryan Khalaf; Catherine L Drennan; Wenjun Zhang
Journal:  Angew Chem Int Ed Engl       Date:  2018-07-03       Impact factor: 15.336

9.  Evaluation of a concerted vs. sequential oxygen activation mechanism in α-ketoglutarate-dependent nonheme ferrous enzymes.

Authors:  Serra Goudarzi; Shyam R Iyer; Jeffrey T Babicz; James J Yan; Günther H J Peters; Hans E M Christensen; Britt Hedman; Keith O Hodgson; Edward I Solomon
Journal:  Proc Natl Acad Sci U S A       Date:  2020-02-24       Impact factor: 11.205

10.  beta-Hydroxylation of the aspartyl residue in the phytotoxin syringomycin E: characterization of two candidate hydroxylases AspH and SyrP in Pseudomonas syringae.

Authors:  Gitanjali M Singh; Pascal D Fortin; Alexander Koglin; Christopher T Walsh
Journal:  Biochemistry       Date:  2008-10-01       Impact factor: 3.162

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