Literature DB >> 21940858

Replication-dependent loss of 5-hydroxymethylcytosine in mouse preimplantation embryos.

Azusa Inoue1, Yi Zhang.   

Abstract

Although global erasure of DNA methylation has been observed in zygotes and primordial germ cells, the responsible enzyme(s) have been elusive. The demonstration that members of the Tet (ten eleven translocation) family of proteins are capable of catalyzing conversion of 5-methylcytosine (5mC) of DNA to 5-hydroxymethylcytosine (5hmC) raises the possibility that Tet proteins may participate in this process. Indeed, recent studies have implicated the involvement of Tet3 in the conversion of 5mC to 5hmC in zygotes. This result, combined with the demonstration that Tet proteins can further oxidize 5hmC to 5-carboxylcytosine followed by excision by thymine-DNA glycosylase, raises the possibility that active demethylation may take place in a process that involves Tet3-mediated oxidation followed by base excision repair. We demonstrated by immunostaining of mitotic chromosome spreads of preimplantation embryos that the 5hmC associated with the paternal genome in zygotes is gradually lost during preimplantation development. Our study suggests that, although the conversion of 5mC to 5hmC in zygotes is an enzyme-catalyzed process, loss of 5hmC during preimplantation appears to be a DNA replication-dependent passive process.

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Year:  2011        PMID: 21940858      PMCID: PMC3799877          DOI: 10.1126/science.1212483

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  9 in total

1.  Demethylation of the zygotic paternal genome.

Authors:  W Mayer; A Niveleau; J Walter; R Fundele; T Haaf
Journal:  Nature       Date:  2000-02-03       Impact factor: 49.962

2.  Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain.

Authors:  Junjie U Guo; Yijing Su; Chun Zhong; Guo-li Ming; Hongjun Song
Journal:  Cell       Date:  2011-04-14       Impact factor: 41.582

3.  Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA.

Authors:  Yu-Fei He; Bin-Zhong Li; Zheng Li; Peng Liu; Yang Wang; Qingyu Tang; Jianping Ding; Yingying Jia; Zhangcheng Chen; Lin Li; Yan Sun; Xiuxue Li; Qing Dai; Chun-Xiao Song; Kangling Zhang; Chuan He; Guo-Liang Xu
Journal:  Science       Date:  2011-08-04       Impact factor: 47.728

Review 4.  Active DNA demethylation: many roads lead to Rome.

Authors:  Susan C Wu; Yi Zhang
Journal:  Nat Rev Mol Cell Biol       Date:  2010-08-04       Impact factor: 94.444

5.  5-Hydroxymethylcytosine in the mammalian zygote is linked with epigenetic reprogramming.

Authors:  Mark Wossidlo; Toshinobu Nakamura; Konstantin Lepikhov; C Joana Marques; Valeri Zakhartchenko; Michele Boiani; Julia Arand; Toru Nakano; Wolf Reik; Jörn Walter
Journal:  Nat Commun       Date:  2011       Impact factor: 14.919

6.  Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine.

Authors:  Khursheed Iqbal; Seung-Gi Jin; Gerd P Pfeifer; Piroska E Szabó
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-14       Impact factor: 11.205

7.  Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1.

Authors:  Mamta Tahiliani; Kian Peng Koh; Yinghua Shen; William A Pastor; Hozefa Bandukwala; Yevgeny Brudno; Suneet Agarwal; Lakshminarayan M Iyer; David R Liu; L Aravind; Anjana Rao
Journal:  Science       Date:  2009-04-16       Impact factor: 47.728

8.  Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine.

Authors:  Shinsuke Ito; Li Shen; Qing Dai; Susan C Wu; Leonard B Collins; James A Swenberg; Chuan He; Yi Zhang
Journal:  Science       Date:  2011-07-21       Impact factor: 47.728

9.  Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification.

Authors:  Shinsuke Ito; Ana C D'Alessio; Olena V Taranova; Kwonho Hong; Lawrence C Sowers; Yi Zhang
Journal:  Nature       Date:  2010-08-26       Impact factor: 49.962

  9 in total
  237 in total

Review 1.  Delineating nuclear reprogramming.

Authors:  Jolene Ooi; Pentao Liu
Journal:  Protein Cell       Date:  2012-03-31       Impact factor: 14.870

Review 2.  Functions of DNA methylation: islands, start sites, gene bodies and beyond.

Authors:  Peter A Jones
Journal:  Nat Rev Genet       Date:  2012-05-29       Impact factor: 53.242

3.  Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome.

Authors:  Miao Yu; Gary C Hon; Keith E Szulwach; Chun-Xiao Song; Liang Zhang; Audrey Kim; Xuekun Li; Qing Dai; Yin Shen; Beomseok Park; Jung-Hyun Min; Peng Jin; Bing Ren; Chuan He
Journal:  Cell       Date:  2012-05-17       Impact factor: 41.582

Review 4.  DNA methylation remodeling in vitro and in vivo.

Authors:  Amander T Clark
Journal:  Curr Opin Genet Dev       Date:  2015-10-24       Impact factor: 5.578

Review 5.  Dynamics of DNA methylation in aging and Alzheimer's disease.

Authors:  Hasan A Irier; Peng Jin
Journal:  DNA Cell Biol       Date:  2012-02-07       Impact factor: 3.311

Review 6.  Somatic Cell Nuclear Transfer Reprogramming: Mechanisms and Applications.

Authors:  Shogo Matoba; Yi Zhang
Journal:  Cell Stem Cell       Date:  2018-07-19       Impact factor: 24.633

Review 7.  Nucleic acid modifications with epigenetic significance.

Authors:  Ye Fu; Chuan He
Journal:  Curr Opin Chem Biol       Date:  2012-10-22       Impact factor: 8.822

8.  Programming and inheritance of parental DNA methylomes in mammals.

Authors:  Lu Wang; Jun Zhang; Jialei Duan; Xinxing Gao; Wei Zhu; Xingyu Lu; Lu Yang; Jing Zhang; Guoqiang Li; Weimin Ci; Wei Li; Qi Zhou; Neel Aluru; Fuchou Tang; Chuan He; Xingxu Huang; Jiang Liu
Journal:  Cell       Date:  2014-05-08       Impact factor: 41.582

Review 9.  5-Hydroxymethylcytosine: generation, fate, and genomic distribution.

Authors:  Li Shen; Yi Zhang
Journal:  Curr Opin Cell Biol       Date:  2013-03-13       Impact factor: 8.382

10.  Germline DNA demethylation dynamics and imprint erasure through 5-hydroxymethylcytosine.

Authors:  Roopsha Sengupta; Jan J Zylicz; Kazuhiro Murakami; Jamie A Hackett; Caroline Lee; Thomas A Down; M Azim Surani
Journal:  Science       Date:  2012-12-06       Impact factor: 47.728

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