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Literature DB >> 23498661

5-Hydroxymethylcytosine: generation, fate, and genomic distribution.

Abstract

5-Methylcytosine (5mC) can be converted to 5-hydroxymethylcytosine (5hmC) in mammalian cells by the ten-eleven translocation (Tet) family of dioxygenases. While 5mC has been extensively studied, we have just started to understand the distribution and function of 5hmC in mammalian genomes. Despite the fact that this new epigenetic mark has only been discovered three years ago, exciting progress has been made in understanding its generation, fate, and genomic distribution. In this review we discuss these progresses as well as the recent advance in the single-base resolution mapping of 5hmC.

Entities: CellLine Chemical Disease Gene Species

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Year: 2013 PMID： 23498661 PMCID： PMC4060438 DOI： 10.1016/j.ceb.2013.02.017

Source DB: PubMed Journal: Curr Opin Cell Biol ISSN： 0955-0674 Impact factor: 8.382

59 in total

1. A CHEMICAL BASIS FOR THE HOST-INDUCED MODIFICATION OF T-EVEN BACTERIOPHAGES.

Authors: A SHEDLOVSKY; S BRENNER
Journal: Proc Natl Acad Sci U S A Date: 1963-08 Impact factor: 11.205

2. ENZYMATIC SYNTHESIS OF DEOXYRIBONUCLEIC ACID. INFLUENCE OF BACTERIOPHAGE T2 ON THE SYNTHETIC PATHWAY IN HOST CELLS.

Authors: A Kornberg; S B Zimmerman; S R Kornberg; J Josse
Journal: Proc Natl Acad Sci U S A Date: 1959-06 Impact factor: 11.205

3. TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity.

Authors: Kristine Williams; Jesper Christensen; Marianne Terndrup Pedersen; Jens V Johansen; Paul A C Cloos; Juri Rappsilber; Kristian Helin
Journal: Nature Date: 2011-04-13 Impact factor: 49.962

4. Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA.

Authors: Yu-Fei He; Bin-Zhong Li; Zheng Li; Peng Liu; Yang Wang; Qingyu Tang; Jianping Ding; Yingying Jia; Zhangcheng Chen; Lin Li; Yan Sun; Xiuxue Li; Qing Dai; Chun-Xiao Song; Kangling Zhang; Chuan He; Guo-Liang Xu
Journal: Science Date: 2011-08-04 Impact factor: 47.728

5. Generation and replication-dependent dilution of 5fC and 5caC during mouse preimplantation development.

Authors: Azusa Inoue; Li Shen; Qing Dai; Chuan He; Yi Zhang
Journal: Cell Res Date: 2011-11-29 Impact factor: 25.617

6. Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine.

Authors: Khursheed Iqbal; Seung-Gi Jin; Gerd P Pfeifer; Piroska E Szabó
Journal: Proc Natl Acad Sci U S A Date: 2011-02-14 Impact factor: 11.205

7. Endogenous cytosine damage products alter the site selectivity of human DNA maintenance methyltransferase DNMT1.

Authors: Victoria Valinluck; Lawrence C Sowers
Journal: Cancer Res Date: 2007-02-01 Impact factor: 12.701

8. Prediction of novel families of enzymes involved in oxidative and other complex modifications of bases in nucleic acids.

Authors: Lakshminarayan M Iyer; Mamta Tahiliani; Anjana Rao; L Aravind
Journal: Cell Cycle Date: 2009-06-27 Impact factor: 4.534

9. Recognition of 5-hydroxymethylcytosine by the Uhrf1 SRA domain.

Authors: Carina Frauer; Thomas Hoffmann; Sebastian Bultmann; Valentina Casa; M Cristina Cardoso; Iris Antes; Heinrich Leonhardt
Journal: PLoS One Date: 2011-06-22 Impact factor: 3.240

10. 5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells.

Authors: Hume Stroud; Suhua Feng; Shannon Morey Kinney; Sriharsa Pradhan; Steven E Jacobsen
Journal: Genome Biol Date: 2011-06-20 Impact factor: 13.583

53 in total

1. Single-locus enrichment without amplification for sequencing and direct detection of epigenetic modifications.

Authors: Thang T Pham; Jun Yin; John S Eid; Evan Adams; Regina Lam; Stephen W Turner; Erick W Loomis; Jun Yi Wang; Paul J Hagerman; Jeremiah W Hanes
Journal: Mol Genet Genomics Date: 2016-01-29 Impact factor: 3.291

Review 2. Advances in the profiling of DNA modifications: cytosine methylation and beyond.

Authors: Nongluk Plongthongkum; Dinh H Diep; Kun Zhang
Journal: Nat Rev Genet Date: 2014-08-27 Impact factor: 53.242

3. The mysterious presence of a 5-methylcytosine oxidase in the Drosophila genome: possible explanations.

Authors: Thomas L Dunwell; Liam J McGuffin; Jim M Dunwell; Gerd P Pfeifer
Journal: Cell Cycle Date: 2013-09-19 Impact factor: 4.534

4. Heparin-binding epidermal growth factor-like growth factor restores Wnt/β-catenin signaling in intestinal stem cells exposed to ischemia/reperfusion injury.

Authors: Chun-Liang Chen; Jixin Yang; Iyore O A James; Hong-Yi Zhang; Gail E Besner
Journal: Surgery Date: 2014-02-06 Impact factor: 3.982