Literature DB >> 20683471

Active DNA demethylation: many roads lead to Rome.

Susan C Wu1, Yi Zhang.   

Abstract

DNA methylation is one of the best-characterized epigenetic modifications and has been implicated in numerous biological processes, including transposable element silencing, genomic imprinting and X chromosome inactivation. Compared with other epigenetic modifications, DNA methylation is thought to be relatively stable. Despite its role in long-term silencing, DNA methylation is more dynamic than originally thought as active DNA demethylation has been observed during specific stages of development. In the past decade, many enzymes have been proposed to carry out active DNA demethylation and growing evidence suggests that, depending on the context, this process may be achieved by multiple mechanisms. Insight into how DNA methylation is dynamically regulated will broaden our understanding of epigenetic regulation and have great implications in somatic cell reprogramming and regenerative medicine.

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Year:  2010        PMID: 20683471      PMCID: PMC3711520          DOI: 10.1038/nrm2950

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  177 in total

1.  Genome-wide methylation patterns in normal and uniparental early mouse embryos.

Authors:  S C Barton; K L Arney; W Shi; A Niveleau; R Fundele; M A Surani; T Haaf
Journal:  Hum Mol Genet       Date:  2001-12-15       Impact factor: 6.150

Review 2.  Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals.

Authors:  Rudolf Jaenisch; Adrian Bird
Journal:  Nat Genet       Date:  2003-03       Impact factor: 38.330

3.  Resistance of IAPs to methylation reprogramming may provide a mechanism for epigenetic inheritance in the mouse.

Authors:  Natasha Lane; Wendy Dean; Sylvia Erhardt; Petra Hajkova; Azim Surani; Jörn Walter; Wolf Reik
Journal:  Genesis       Date:  2003-02       Impact factor: 2.487

Review 4.  Epigenetic reprogramming in early mammalian development and following somatic nuclear transfer.

Authors:  Wendy Dean; Fátima Santos; Wolf Reik
Journal:  Semin Cell Dev Biol       Date:  2003-02       Impact factor: 7.727

5.  AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli.

Authors:  Pål Ø Falnes; Rune F Johansen; Erling Seeberg
Journal:  Nature       Date:  2002-09-12       Impact factor: 49.962

Review 6.  Epigenetic reprogramming during early development in mammals.

Authors:  Fátima Santos; Wendy Dean
Journal:  Reproduction       Date:  2004-06       Impact factor: 3.906

7.  Oxidative demethylation by Escherichia coli AlkB directly reverts DNA base damage.

Authors:  Sarah C Trewick; Timothy F Henshaw; Robert P Hausinger; Tomas Lindahl; Barbara Sedgwick
Journal:  Nature       Date:  2002-09-12       Impact factor: 49.962

8.  Selective, stable demethylation of the interleukin-2 gene enhances transcription by an active process.

Authors:  Denis Bruniquel; Ronald H Schwartz
Journal:  Nat Immunol       Date:  2003-01-27       Impact factor: 25.606

9.  Demethylation of a hypermethylated P15/INK4B gene in patients with myelodysplastic syndrome by 5-Aza-2'-deoxycytidine (decitabine) treatment.

Authors:  Michael Daskalakis; Tudung T Nguyen; Carvell Nguyen; Per Guldberg; Gabriele Köhler; Pierre Wijermans; Peter A Jones; Michael Lübbert
Journal:  Blood       Date:  2002-10-15       Impact factor: 22.113

10.  ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase.

Authors:  Zhizhong Gong; Teresa Morales-Ruiz; Rafael R Ariza; Teresa Roldán-Arjona; Lisa David; Jian Kang Zhu
Journal:  Cell       Date:  2002-12-13       Impact factor: 41.582

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  439 in total

1.  Preparation of DNA containing 5-hydroxymethyl-2'-deoxycytidine modification through phosphoramidites with TBDMS as 5-hydroxymethyl protecting group.

Authors:  Qing Dai; Chuan He
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2011-12

2.  Human leptin tissue distribution, but not weight loss-dependent change in expression, is associated with methylation of its promoter.

Authors:  Matilde Marchi; Simonetta Lisi; Michele Curcio; Serena Barbuti; Paolo Piaggi; Giovanni Ceccarini; Monica Nannipieri; Marco Anselmino; Claudio Di Salvo; Paolo Vitti; Aldo Pinchera; Ferruccio Santini; Margherita Maffei
Journal:  Epigenetics       Date:  2011-10-01       Impact factor: 4.528

3.  G9a interacts with Snail and is critical for Snail-mediated E-cadherin repression in human breast cancer.

Authors:  Chenfang Dong; Yadi Wu; Jun Yao; Yifan Wang; Yinhua Yu; Piotr G Rychahou; B Mark Evers; Binhua P Zhou
Journal:  J Clin Invest       Date:  2012-03-12       Impact factor: 14.808

4.  Recurring mutations in myeloproliferative neoplasms alter epigenetic regulation of gene expression.

Authors:  Gary W Reuther
Journal:  Am J Cancer Res       Date:  2011-05-29       Impact factor: 6.166

Review 5.  Epigenetic mechanisms in memory and synaptic function.

Authors:  Faraz A Sultan; Jeremy J Day
Journal:  Epigenomics       Date:  2011-04       Impact factor: 4.778

6.  Injury-dependent Müller glia and ganglion cell reprogramming during tissue regeneration requires Apobec2a and Apobec2b.

Authors:  Curtis Powell; Fairouz Elsaeidi; Daniel Goldman
Journal:  J Neurosci       Date:  2012-01-18       Impact factor: 6.167

Review 7.  Mechanisms underlying the formation of induced pluripotent stem cells.

Authors:  Federico González; Danwei Huangfu
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2015-09-18       Impact factor: 5.814

Review 8.  SUMO: a multifaceted modifier of chromatin structure and function.

Authors:  Caelin Cubeñas-Potts; Michael J Matunis
Journal:  Dev Cell       Date:  2013-01-14       Impact factor: 12.270

Review 9.  The role of DNA methylation in aging, rejuvenation, and age-related disease.

Authors:  Adiv A Johnson; Kemal Akman; Stuart R G Calimport; Daniel Wuttke; Alexandra Stolzing; João Pedro de Magalhães
Journal:  Rejuvenation Res       Date:  2012-10       Impact factor: 4.663

Review 10.  Nucleic acid modifications with epigenetic significance.

Authors:  Ye Fu; Chuan He
Journal:  Curr Opin Chem Biol       Date:  2012-10-22       Impact factor: 8.822

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