Literature DB >> 20639862

Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification.

Shinsuke Ito1, Ana C D'Alessio, Olena V Taranova, Kwonho Hong, Lawrence C Sowers, Yi Zhang.   

Abstract

DNA methylation is one of the best-characterized epigenetic modifications. Although the enzymes that catalyse DNA methylation have been characterized, enzymes responsible for demethylation have been elusive. A recent study indicates that the human TET1 protein could catalyse the conversion of 5-methylcytosine (5mC) of DNA to 5-hydroxymethylcytosine (5hmC), raising the possibility that DNA demethylation may be a Tet1-mediated process. Here we extend this study by demonstrating that all three mouse Tet proteins (Tet1, Tet2 and Tet3) can also catalyse a similar reaction. Tet1 has an important role in mouse embryonic stem (ES) cell maintenance through maintaining the expression of Nanog in ES cells. Downregulation of Nanog via Tet1 knockdown correlates with methylation of the Nanog promoter, supporting a role for Tet1 in regulating DNA methylation status. Furthermore, knockdown of Tet1 in pre-implantation embryos results in a bias towards trophectoderm differentiation. Thus, our studies not only uncover the enzymatic activity of the Tet proteins, but also demonstrate a role for Tet1 in ES cell maintenance and inner cell mass cell specification.

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Year:  2010        PMID: 20639862      PMCID: PMC3491567          DOI: 10.1038/nature09303

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  22 in total

1.  Demethylation of the zygotic paternal genome.

Authors:  W Mayer; A Niveleau; J Walter; R Fundele; T Haaf
Journal:  Nature       Date:  2000-02-03       Impact factor: 49.962

2.  Maintenance of self-renewal ability of mouse embryonic stem cells in the absence of DNA methyltransferases Dnmt1, Dnmt3a and Dnmt3b.

Authors:  Akiko Tsumura; Tomohiro Hayakawa; Yuichi Kumaki; Shin-ichiro Takebayashi; Morito Sakaue; Chisa Matsuoka; Kunitada Shimotohno; Fuyuki Ishikawa; En Li; Hiroki R Ueda; Jun-ichi Nakayama; Masaki Okano
Journal:  Genes Cells       Date:  2006-07       Impact factor: 1.891

3.  Dissecting self-renewal in stem cells with RNA interference.

Authors:  Natalia Ivanova; Radu Dobrin; Rong Lu; Iulia Kotenko; John Levorse; Christina DeCoste; Xenia Schafer; Yi Lun; Ihor R Lemischka
Journal:  Nature       Date:  2006-06-11       Impact factor: 49.962

Review 4.  Linking DNA methylation and histone modification: patterns and paradigms.

Authors:  Howard Cedar; Yehudit Bergman
Journal:  Nat Rev Genet       Date:  2009-05       Impact factor: 53.242

5.  Active demethylation of the paternal genome in the mouse zygote.

Authors:  J Oswald; S Engemann; N Lane; W Mayer; A Olek; R Fundele; W Dean; W Reik; J Walter
Journal:  Curr Biol       Date:  2000-04-20       Impact factor: 10.834

6.  Epigenetic silencing of RNA polymerase I transcription: a role for DNA methylation and histone modification in nucleolar dominance.

Authors:  Z J Chen; C S Pikaard
Journal:  Genes Dev       Date:  1997-08-15       Impact factor: 11.361

7.  Epigenetic regulation of Nanog gene in embryonic stem and trophoblast stem cells.

Authors:  Naoko Hattori; Yuko Imao; Koichiro Nishino; Naka Hattori; Jun Ohgane; Shintaro Yagi; Satoshi Tanaka; Kunio Shiota
Journal:  Genes Cells       Date:  2007-03       Impact factor: 1.891

Review 8.  Genetic and epigenetic regulators of pluripotency.

Authors:  M Azim Surani; Katsuhiko Hayashi; Petra Hajkova
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

9.  Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency.

Authors:  Christian Popp; Wendy Dean; Suhua Feng; Shawn J Cokus; Simon Andrews; Matteo Pellegrini; Steven E Jacobsen; Wolf Reik
Journal:  Nature       Date:  2010-02-25       Impact factor: 49.962

10.  The H3K36 demethylase Jhdm1b/Kdm2b regulates cell proliferation and senescence through p15(Ink4b).

Authors:  Jin He; Eric M Kallin; Yu-Ichi Tsukada; Yi Zhang
Journal:  Nat Struct Mol Biol       Date:  2008-10-05       Impact factor: 15.369

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  1100 in total

1.  Epigenetic dysregulation of Oxtr in Tet1-deficient mice has implications for neuropsychiatric disorders.

Authors:  Aaron J Towers; Martine W Tremblay; Leeyup Chung; Xin-Lei Li; Alexandra L Bey; Wenhao Zhang; Xinyu Cao; Xiaoming Wang; Ping Wang; Lara J Duffney; Stephen K Siecinski; Sonia Xu; Yuna Kim; Xiangyin Kong; Simon Gregory; Wei Xie; Yong-Hui Jiang
Journal:  JCI Insight       Date:  2018-12-06

2.  Clinical analysis of NSCLC patients reveals lack of association between EGFR mutation and TET1 downregulation.

Authors:  J-I Lai; Y-C Lai; Y-C Chen; N-K Wang; J-N Pan; W-S Wang; S-C Chang
Journal:  Cancer Gene Ther       Date:  2017-08-04       Impact factor: 5.987

3.  Identification of epigenetic DNA modifications with a protein nanopore.

Authors:  Emma V B Wallace; David Stoddart; Andrew J Heron; Ellina Mikhailova; Giovanni Maglia; Timothy J Donohoe; Hagan Bayley
Journal:  Chem Commun (Camb)       Date:  2010-10-06       Impact factor: 6.222

4.  The iCRISPR platform for rapid genome editing in human pluripotent stem cells.

Authors:  Zengrong Zhu; Federico González; Danwei Huangfu
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

5.  Preparation of DNA containing 5-hydroxymethyl-2'-deoxycytidine modification through phosphoramidites with TBDMS as 5-hydroxymethyl protecting group.

Authors:  Qing Dai; Chuan He
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2011-12

6.  A sensitive mass spectrometry method for simultaneous quantification of DNA methylation and hydroxymethylation levels in biological samples.

Authors:  Thuc Le; Kee-Pyo Kim; Guoping Fan; Kym F Faull
Journal:  Anal Biochem       Date:  2011-01-24       Impact factor: 3.365

7.  Embryonic lethal phenotype reveals a function of TDG in maintaining epigenetic stability.

Authors:  Daniel Cortázar; Christophe Kunz; Jim Selfridge; Teresa Lettieri; Yusuke Saito; Eilidh MacDougall; Annika Wirz; David Schuermann; Angelika L Jacobs; Fredy Siegrist; Roland Steinacher; Josef Jiricny; Adrian Bird; Primo Schär
Journal:  Nature       Date:  2011-01-30       Impact factor: 49.962

Review 8.  Clonal Hematopoiesis and Evolution to Hematopoietic Malignancies.

Authors:  Robert L Bowman; Lambert Busque; Ross L Levine
Journal:  Cell Stem Cell       Date:  2018-02-01       Impact factor: 24.633

9.  Lithium reduces the effects of rotenone-induced complex I dysfunction on DNA methylation and hydroxymethylation in rat cortical primary neurons.

Authors:  Gustavo Scola; Helena K Kim; L Trevor Young; Mirian Salvador; Ana C Andreazza
Journal:  Psychopharmacology (Berl)       Date:  2014-04-29       Impact factor: 4.530

Review 10.  Vitamin C in Stem Cell Reprogramming and Cancer.

Authors:  Luisa Cimmino; Benjamin G Neel; Iannis Aifantis
Journal:  Trends Cell Biol       Date:  2018-04-30       Impact factor: 20.808

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