Literature DB >> 16159215

Slowing DNA translocation in a solid-state nanopore.

Daniel Fologea1, James Uplinger, Brian Thomas, David S McNabb, Jiali Li.   

Abstract

Reducing a DNA molecule's translocation speed in a solid-state nanopore is a key step toward rapid single molecule identification. Here we demonstrate that DNA translocation speeds can be reduced by an order of magnitude over previous results. By controlling the electrolyte temperature, salt concentration, viscosity, and the electrical bias voltage across the nanopore, we obtain a 3 base/micros translocation speed for 3 kbp double-stranded DNA in a 4-8 nm diameter silicon nitride pore. Our results also indicate that the ionic conductivity inside such a nanopore is smaller than it is in bulk.

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Year:  2005        PMID: 16159215      PMCID: PMC3037730          DOI: 10.1021/nl051063o

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  17 in total

1.  Driven polymer translocation through a narrow pore.

Authors:  D K Lubensky; D R Nelson
Journal:  Biophys J       Date:  1999-10       Impact factor: 4.033

2.  Rapid discrimination among individual DNA hairpin molecules at single-nucleotide resolution using an ion channel.

Authors:  W Vercoutere; S Winters-Hilt; H Olsen; D Deamer; D Haussler; M Akeson
Journal:  Nat Biotechnol       Date:  2001-03       Impact factor: 54.908

3.  Polymer Translocation through a Pore in a Membrane.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-07-22       Impact factor: 9.161

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Authors:  J Li; D Stein; C McMullan; D Branton; M J Aziz; J A Golovchenko
Journal:  Nature       Date:  2001-07-12       Impact factor: 49.962

5.  Driven DNA transport into an asymmetric nanometer-scale pore.

Authors:  S E Henrickson; M Misakian; B Robertson; J J Kasianowicz
Journal:  Phys Rev Lett       Date:  2000-10-02       Impact factor: 9.161

6.  Rapid nanopore discrimination between single polynucleotide molecules.

Authors:  A Meller; L Nivon; E Brandin; J Golovchenko; D Branton
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-01       Impact factor: 11.205

7.  Fabrication of solid-state nanopores with single-nanometre precision.

Authors:  A J Storm; J H Chen; X S Ling; H W Zandbergen; C Dekker
Journal:  Nat Mater       Date:  2003-08       Impact factor: 43.841

8.  Sizing DNA using a nanometer-diameter pore.

Authors:  Jiunn B Heng; Chuen Ho; Taekyung Kim; Rolf Timp; Aleksij Aksimentiev; Yelena V Grinkova; Stephen Sligar; Klaus Schulten; Gregory Timp
Journal:  Biophys J       Date:  2004-08-23       Impact factor: 4.033

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Authors:  J J Kasianowicz; E Brandin; D Branton; D W Deamer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

Review 10.  The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides.

Authors:  G S Manning
Journal:  Q Rev Biophys       Date:  1978-05       Impact factor: 5.318

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  116 in total

1.  Characterizing and controlling the motion of ssDNA in a solid-state nanopore.

Authors:  Binquan Luan; Glenn Martyna; Gustavo Stolovitzky
Journal:  Biophys J       Date:  2011-11-01       Impact factor: 4.033

2.  Single molecule transcription profiling with AFM.

Authors:  Jason Reed; Bud Mishra; Bede Pittenger; Sergei Magonov; Joshua Troke; Michael A Teitell; James K Gimzewski
Journal:  Nanotechnology       Date:  2007-05-09       Impact factor: 3.874

3.  DNA translocation through an array of kinked nanopores.

Authors:  Zhu Chen; Yingbing Jiang; Darren R Dunphy; David P Adams; Carter Hodges; Nanguo Liu; Nan Zhang; George Xomeritakis; Xiaozhong Jin; N R Aluru; Steven J Gaik; Hugh W Hillhouse; C Jeffrey Brinker
Journal:  Nat Mater       Date:  2010-08       Impact factor: 43.841

4.  Synchronous optical and electrical detection of biomolecules traversing through solid-state nanopores.

Authors:  Gautam V Soni; Alon Singer; Zhiliang Yu; Yingjie Sun; Ben McNally; Amit Meller
Journal:  Rev Sci Instrum       Date:  2010-01       Impact factor: 1.523

5.  Using a nanopore for single molecule detection and single cell transfection.

Authors:  Edward M Nelson; Volker Kurz; Jiwook Shim; Winston Timp; Gregory Timp
Journal:  Analyst       Date:  2012-05-29       Impact factor: 4.616

6.  Fast DNA sequencing via transverse electronic transport.

Authors:  Johan Lagerqvist; Michael Zwolak; Massimiliano Di Ventra
Journal:  Nano Lett       Date:  2006-04       Impact factor: 11.189

7.  Detection of DNA sequences using an alternating electric field in a nanopore capacitor.

Authors:  Grigori Sigalov; Jeffrey Comer; Gregory Timp; Aleksei Aksimentiev
Journal:  Nano Lett       Date:  2007-12-11       Impact factor: 11.189

8.  p-n Semiconductor membrane for electrically tunable ion current rectification and filtering.

Authors:  Maria E Gracheva; Julien Vidal; Jean-Pierre Leburton
Journal:  Nano Lett       Date:  2007-05-22       Impact factor: 11.189

9.  Influence of the environment and probes on rapid DNA sequencing via transverse electronic transport.

Authors:  Johan Lagerqvist; Michael Zwolak; Massimiliano Di Ventra
Journal:  Biophys J       Date:  2007-05-25       Impact factor: 4.033

10.  Mechanical Trapping of DNA in a Double-Nanopore System.

Authors:  Sergii Pud; Shu-Han Chao; Maxim Belkin; Daniel Verschueren; Teun Huijben; Casper van Engelenburg; Cees Dekker; Aleksei Aksimentiev
Journal:  Nano Lett       Date:  2016-12-01       Impact factor: 11.189

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