Literature DB >> 21297626

Fast DNA sequencing with a graphene-based nanochannel device.

Seung Kyu Min1, Woo Youn Kim, Yeonchoo Cho, Kwang S Kim.   

Abstract

Devices in which a single strand of DNA is threaded through a nanopore could be used to efficiently sequence DNA. However, various issues will have to be resolved to make this approach practical, including controlling the DNA translocation rate, suppressing stochastic nucleobase motions, and resolving the signal overlap between different nucleobases. Here, we demonstrate theoretically the feasibility of DNA sequencing using a fluidic nanochannel functionalized with a graphene nanoribbon. This approach involves deciphering the changes that occur in the conductance of the nanoribbon as a result of its interactions with the nucleobases via π-π stacking. We show that as a DNA strand passes through the nanochannel, the distinct conductance characteristics of the nanoribbon (calculated using a method based on density functional theory coupled to non-equilibrium Green function theory) allow the different nucleobases to be distinguished using a data-mining technique and a two-dimensional transient autocorrelation analysis. This fast and reliable DNA sequencing device should be experimentally feasible in the near future.

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Year:  2011        PMID: 21297626     DOI: 10.1038/nnano.2010.283

Source DB:  PubMed          Journal:  Nat Nanotechnol        ISSN: 1748-3387            Impact factor:   39.213


  27 in total

1.  Low-friction nanoscale linear bearing realized from multiwall carbon nanotubes

Authors: 
Journal:  Science       Date:  2000-07-28       Impact factor: 47.728

2.  A vision for the future of genomics research.

Authors:  Francis S Collins; Eric D Green; Alan E Guttmacher; Mark S Guyer
Journal:  Nature       Date:  2003-04-14       Impact factor: 49.962

3.  Electric field effect in atomically thin carbon films.

Authors:  K S Novoselov; A K Geim; S V Morozov; D Jiang; Y Zhang; S V Dubonos; I V Grigorieva; A A Firsov
Journal:  Science       Date:  2004-10-22       Impact factor: 47.728

4.  Extracting subnanometer single shells from ultralong multiwalled carbon nanotubes.

Authors:  Byung Hee Hong; Joshua P Small; Meninder S Purewal; Asher Mullokandov; Matthew Y Sfeir; Feng Wang; Ju Young Lee; Tony F Heinz; Louis E Brus; Philip Kim; Kwang S Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-26       Impact factor: 11.205

5.  Room-temperature quantum Hall effect in graphene.

Authors:  K S Novoselov; Z Jiang; Y Zhang; S V Morozov; H L Stormer; U Zeitler; J C Maan; G S Boebinger; P Kim; A K Geim
Journal:  Science       Date:  2007-02-15       Impact factor: 47.728

6.  Tuning molecular orbitals in molecular electronics and spintronics.

Authors:  Woo Youn Kim; Kwang S Kim
Journal:  Acc Chem Res       Date:  2010-01-19       Impact factor: 22.384

7.  Atomically precise bottom-up fabrication of graphene nanoribbons.

Authors:  Jinming Cai; Pascal Ruffieux; Rached Jaafar; Marco Bieri; Thomas Braun; Stephan Blankenburg; Matthias Muoth; Ari P Seitsonen; Moussa Saleh; Xinliang Feng; Klaus Müllen; Roman Fasel
Journal:  Nature       Date:  2010-07-22       Impact factor: 49.962

8.  Carbon nanotube, graphene, nanowire, and molecule-based electron and spin transport phenomena using the nonequilibrium Green's function method at the level of first principles theory.

Authors:  Woo Youn Kim; Kwang S Kim
Journal:  J Comput Chem       Date:  2008-05       Impact factor: 3.376

Review 9.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

10.  Structures and interaction energies of stacked graphene-nucleobase complexes.

Authors:  Jens Antony; Stefan Grimme
Journal:  Phys Chem Chem Phys       Date:  2008-03-05       Impact factor: 3.676

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  45 in total

1.  Stacked graphene-Al2O3 nanopore sensors for sensitive detection of DNA and DNA-protein complexes.

Authors:  Bala Murali Venkatesan; David Estrada; Shouvik Banerjee; Xiaozhong Jin; Vincent E Dorgan; Myung-Ho Bae; Narayana R Aluru; Eric Pop; Rashid Bashir
Journal:  ACS Nano       Date:  2011-12-23       Impact factor: 15.881

2.  High throughput fabrication of disposable nanofluidic lab-on-chip devices for single molecule studies.

Authors:  Jeroen A van Kan; Ce Zhang; Piravi Perumal Malar; Johan R C van der Maarel
Journal:  Biomicrofluidics       Date:  2012-07-30       Impact factor: 2.800

Review 3.  Nanopore sensors for nucleic acid analysis.

Authors:  Bala Murali Venkatesan; Rashid Bashir
Journal:  Nat Nanotechnol       Date:  2011-09-18       Impact factor: 39.213

4.  Colloquium: Ionic phenomena in nanoscale pores through 2D materials.

Authors:  Subin Sahu; Michael Zwolak
Journal:  Rev Mod Phys       Date:  2019       Impact factor: 54.494

5.  Electrokinetically-driven transport of DNA through focused ion beam milled nanofluidic channels.

Authors:  Laurent D Menard; J Michael Ramsey
Journal:  Anal Chem       Date:  2012-12-24       Impact factor: 6.986

6.  Aviram-Ratner rectifying mechanism for DNA base-pair sequencing through graphene nanogaps.

Authors:  Luis A Agapito; Jacob Gayles; Christian Wolowiec; Nicholas Kioussis
Journal:  Nanotechnology       Date:  2012-03-14       Impact factor: 3.874

7.  Assessing graphene nanopores for sequencing DNA.

Authors:  David B Wells; Maxim Belkin; Jeffrey Comer; Aleksei Aksimentiev
Journal:  Nano Lett       Date:  2012-07-17       Impact factor: 11.189

8.  Substituent Effects in π-Stacking of Histidine on Functionalized-SWNT and Graphene.

Authors:  Ge Tian; Huifang Li; Wanyong Ma; Yixuan Wang
Journal:  Comput Theor Chem       Date:  2015-06-15       Impact factor: 1.926

9.  Molecular Transport across the Ionic Liquid-Aqueous Electrolyte Interface in a MoS2 Nanopore.

Authors:  Manish Shankla; Aleksei Aksimentiev
Journal:  ACS Appl Mater Interfaces       Date:  2020-05-26       Impact factor: 9.229

Review 10.  Recent trends in nanopores for biotechnology.

Authors:  Daniel H Stoloff; Meni Wanunu
Journal:  Curr Opin Biotechnol       Date:  2012-12-19       Impact factor: 9.740

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