Literature DB >> 20192777

Nanopore analysis of nucleic acids bound to exonucleases and polymerases.

David Deamer1.   

Abstract

When a voltage is imposed across a thin membrane containing a nanoscopic pore, the electric field generated within the pore captures linear ionized polymers, such as nucleic acids, that are present in the solution bathing the pore. The nucleic acid molecule transiently blocks ionic current as it is translocated through the pore, and modulations of the current provide information about the structure and dynamic motion of the molecule. Altering the imposed voltage allows movement of the DNA molecule in the pore to be controlled. If a DNA-processing enzyme such as an exonuclease or polymerase is present, the enzyme-DNA complex is also drawn to the pore, and further modulations of the ionic current reflect enzyme function at the single-molecule level on millisecond timescales. The combined enzymatic and voltage control of a DNA molecule in the nanopore can be used to sequence the DNA.

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Year:  2010        PMID: 20192777     DOI: 10.1146/annurev.biophys.093008.131250

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  13 in total

Review 1.  Nanopore analysis: An emerging technique for studying the folding and misfolding of proteins.

Authors:  Claudia Madampage; Omid Tavassoly; Chris Christensen; Meena Kumari; Jeremy S Lee
Journal:  Prion       Date:  2012-04-01       Impact factor: 3.931

Review 2.  Nanopore sensors for nucleic acid analysis.

Authors:  Bala Murali Venkatesan; Rashid Bashir
Journal:  Nat Nanotechnol       Date:  2011-09-18       Impact factor: 39.213

Review 3.  Nanopore Sensing.

Authors:  Wenqing Shi; Alicia K Friedman; Lane A Baker
Journal:  Anal Chem       Date:  2016-11-18       Impact factor: 6.986

4.  Why does β-cyclodextrin prefer to bind nucleotides with an adenine base rather than other 2'-deoxyribonucleoside 5'-monophosphates?

Authors:  Dongsheng Zhang; Jingjing Liu; Teng Wang; Liping Sun
Journal:  J Mol Model       Date:  2017-04-01       Impact factor: 1.810

5.  Construction of an aerolysin nanopore in a lipid bilayer for single-oligonucleotide analysis.

Authors:  Chan Cao; Dong-Fang Liao; Jie Yu; He Tian; Yi-Tao Long
Journal:  Nat Protoc       Date:  2017-08-24       Impact factor: 13.491

6.  Controlled translocation of individual DNA molecules through protein nanopores with engineered molecular brakes.

Authors:  Marcela Rincon-Restrepo; Ellina Mikhailova; Hagan Bayley; Giovanni Maglia
Journal:  Nano Lett       Date:  2011-01-11       Impact factor: 11.189

Review 7.  Recent progress in dissecting molecular recognition by DNA polymerases with non-native substrates.

Authors:  Kaitlin M Pugliese; Gregory A Weiss
Journal:  Curr Opin Chem Biol       Date:  2017-11-02       Impact factor: 8.822

Review 8.  Single-molecule investigation of G-quadruplex using a nanopore sensor.

Authors:  Jiwook Shim; Li-Qun Gu
Journal:  Methods       Date:  2012-04-02       Impact factor: 3.608

9.  Probing mercury(II)-DNA interactions by nanopore stochastic sensing.

Authors:  Guihua Wang; Qitao Zhao; Xiaofeng Kang; Xiyun Guan
Journal:  J Phys Chem B       Date:  2013-04-23       Impact factor: 2.991

Review 10.  Recent advances in nanopore sequencing.

Authors:  Raj D Maitra; Jungsuk Kim; William B Dunbar
Journal:  Electrophoresis       Date:  2012-11-09       Impact factor: 3.535

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