Literature DB >> 21921928

Assessing and managing risk when sharing aggregate genetic variant data.

David W Craig1, Robert M Goor, Zhenyuan Wang, Justin Paschall, Jim Ostell, Michael Feolo, Stephen T Sherry, Teri A Manolio.   

Abstract

Access to genetic data across studies is an important aspect of identifying new genetic associations through genome-wide association studies (GWASs). Meta-analysis across multiple GWASs with combined cohort sizes of tens of thousands of individuals often uncovers many more genome-wide associated loci than the original individual studies; this emphasizes the importance of tools and mechanisms for data sharing. However, even sharing summary-level data, such as allele frequencies, inherently carries some degree of privacy risk to study participants. Here we discuss mechanisms and resources for sharing data from GWASs, particularly focusing on approaches for assessing and quantifying the privacy risks to participants that result from the sharing of summary-level data.

Entities:  

Mesh:

Year:  2011        PMID: 21921928      PMCID: PMC3349221          DOI: 10.1038/nrg3067

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  40 in total

1.  dbSNP: the NCBI database of genetic variation.

Authors:  S T Sherry; M H Ward; M Kholodov; J Baker; L Phan; E M Smigielski; K Sirotkin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  JSNP: a database of common gene variations in the Japanese population.

Authors:  Mika Hirakawa; Toshihiro Tanaka; Yoichi Hashimoto; Masako Kuroda; Toshihisa Takagi; Yusuke Nakamura
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

3.  Complement factor H polymorphism in age-related macular degeneration.

Authors:  Robert J Klein; Caroline Zeiss; Emily Y Chew; Jen-Yue Tsai; Richard S Sackler; Chad Haynes; Alice K Henning; John Paul SanGiovanni; Shrikant M Mane; Susan T Mayne; Michael B Bracken; Frederick L Ferris; Jurg Ott; Colin Barnstable; Josephine Hoh
Journal:  Science       Date:  2005-03-10       Impact factor: 47.728

Review 4.  Genome-wide association studies for common diseases and complex traits.

Authors:  Joel N Hirschhorn; Mark J Daly
Journal:  Nat Rev Genet       Date:  2005-02       Impact factor: 53.242

5.  The NCBI dbGaP database of genotypes and phenotypes.

Authors:  Matthew D Mailman; Michael Feolo; Yumi Jin; Masato Kimura; Kimberly Tryka; Rinat Bagoutdinov; Luning Hao; Anne Kiang; Justin Paschall; Lon Phan; Natalia Popova; Stephanie Pretel; Lora Ziyabari; Moira Lee; Yu Shao; Zhen Y Wang; Karl Sirotkin; Minghong Ward; Michael Kholodov; Kerry Zbicz; Jeffrey Beck; Michael Kimelman; Sergey Shevelev; Don Preuss; Eugene Yaschenko; Alan Graeff; James Ostell; Stephen T Sherry
Journal:  Nat Genet       Date:  2007-10       Impact factor: 38.330

6.  A navigator for human genome epidemiology.

Authors:  Wei Yu; Marta Gwinn; Melinda Clyne; Ajay Yesupriya; Muin J Khoury
Journal:  Nat Genet       Date:  2008-02       Impact factor: 38.330

Review 7.  A framework for interpreting genome-wide association studies of psychiatric disorders.

Authors: 
Journal:  Mol Psychiatry       Date:  2008-11-11       Impact factor: 15.992

8.  Technical and policy approaches to balancing patient privacy and data sharing in clinical and translational research.

Authors:  Bradley Malin; David Karp; Richard H Scheuermann
Journal:  J Investig Med       Date:  2010-01       Impact factor: 2.895

9.  Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.

Authors:  Alexandra Zhernakova; Eli A Stahl; Gosia Trynka; Soumya Raychaudhuri; Eleanora A Festen; Lude Franke; Harm-Jan Westra; Rudolf S N Fehrmann; Fina A S Kurreeman; Brian Thomson; Namrata Gupta; Jihane Romanos; Ross McManus; Anthony W Ryan; Graham Turner; Elisabeth Brouwer; Marcel D Posthumus; Elaine F Remmers; Francesca Tucci; Rene Toes; Elvira Grandone; Maria Cristina Mazzilli; Anna Rybak; Bozena Cukrowska; Marieke J H Coenen; Timothy R D J Radstake; Piet L C M van Riel; Yonghong Li; Paul I W de Bakker; Peter K Gregersen; Jane Worthington; Katherine A Siminovitch; Lars Klareskog; Tom W J Huizinga; Cisca Wijmenga; Robert M Plenge
Journal:  PLoS Genet       Date:  2011-02-24       Impact factor: 5.917

10.  The limits of individual identification from sample allele frequencies: theory and statistical analysis.

Authors:  Peter M Visscher; William G Hill
Journal:  PLoS Genet       Date:  2009-10-02       Impact factor: 5.917

View more
  29 in total

Review 1.  Bringing genome-wide association findings into clinical use.

Authors:  Teri A Manolio
Journal:  Nat Rev Genet       Date:  2013-07-09       Impact factor: 53.242

2.  Detecting the Presence of an Individual in Phenotypic Summary Data.

Authors:  Yongtai Liu; Zhiyu Wan; Weiyi Xia; Murat Kantarcioglu; Yevgeniy Vorobeychik; Ellen Wright Clayton; Abel Kho; David Carrell; Bradley A Malin
Journal:  AMIA Annu Symp Proc       Date:  2018-12-05

3.  Expanding Access to Large-Scale Genomic Data While Promoting Privacy: A Game Theoretic Approach.

Authors:  Zhiyu Wan; Yevgeniy Vorobeychik; Weiyi Xia; Ellen Wright Clayton; Murat Kantarcioglu; Bradley Malin
Journal:  Am J Hum Genet       Date:  2017-01-05       Impact factor: 11.025

4.  Questioning the limits of genomic privacy.

Authors:  Bartha M Knoppers; Edward S Dove; Jan-Eric Litton; J J Nietfeld
Journal:  Am J Hum Genet       Date:  2012-09-07       Impact factor: 11.025

5.  One Size Doesn't Fit All: Measuring Individual Privacy in Aggregate Genomic Data.

Authors:  Sean Simmons; Bonnie Berger
Journal:  Proc IEEE Symp Secur Priv Workshops       Date:  2015-07-20

6.  Identification of individuals by trait prediction using whole-genome sequencing data.

Authors:  Christoph Lippert; Riccardo Sabatini; M Cyrus Maher; Eun Yong Kang; Seunghak Lee; Okan Arikan; Alena Harley; Axel Bernal; Peter Garst; Victor Lavrenko; Ken Yocum; Theodore Wong; Mingfu Zhu; Wen-Yun Yang; Chris Chang; Tim Lu; Charlie W H Lee; Barry Hicks; Smriti Ramakrishnan; Haibao Tang; Chao Xie; Jason Piper; Suzanne Brewerton; Yaron Turpaz; Amalio Telenti; Rhonda K Roby; Franz J Och; J Craig Venter
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-05       Impact factor: 11.205

Review 7.  Non-coding RNAs in cardiovascular diseases: diagnostic and therapeutic perspectives.

Authors:  Wolfgang Poller; Stefanie Dimmeler; Stephane Heymans; Tanja Zeller; Jan Haas; Mahir Karakas; David-Manuel Leistner; Philipp Jakob; Shinichi Nakagawa; Stefan Blankenberg; Stefan Engelhardt; Thomas Thum; Christian Weber; Benjamin Meder; Roger Hajjar; Ulf Landmesser
Journal:  Eur Heart J       Date:  2018-08-01       Impact factor: 29.983

Review 8.  Routes for breaching and protecting genetic privacy.

Authors:  Yaniv Erlich; Arvind Narayanan
Journal:  Nat Rev Genet       Date:  2014-05-08       Impact factor: 53.242

9.  The Genotype-Tissue Expression (GTEx) project.

Authors: 
Journal:  Nat Genet       Date:  2013-06       Impact factor: 38.330

10.  Privacy in the Genomic Era.

Authors:  Muhammad Naveed; Erman Ayday; Ellen W Clayton; Jacques Fellay; Carl A Gunter; Jean-Pierre Hubaux; Bradley A Malin; Xiaofeng Wang
Journal:  ACM Comput Surv       Date:  2015-09       Impact factor: 10.282

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.