Literature DB >> 21918814

Multiplet-filtered and gradient-selected zero-quantum TROSY experiments for 13C1H3 methyl groups in proteins.

Michelle L Gill1, Arthur G Palmer.   

Abstract

Multiplet-filtered and gradient-selected heteronuclear zero-quantum coherence (gsHZQC) TROSY experiments are described for measuring (1)H-(13)C correlations for (13)CH(3) methyl groups in proteins. These experiments provide improved suppression of undesirable, broad outer components of the heteronuclear zero-quantum multiplet in medium-sized proteins, or in flexible sites of larger proteins, compared to previously described HZQC sequences (Tugarinov et al. in J Am Chem Soc 126:4921-4925, 2004; Ollerenshaw et al. in J Biomol NMR 33:25-41, 2005). Hahn-echo versions of the gsHZQC experiment also are described for measuring zero- and double-quantum transverse relaxation rate constants for identification of chemical exchange broadening. Application of the proposed pulse sequences to Escherichia coli ribonuclease HI, with a molecular mass of 18 kD, indicates that improved multiplet suppression is obtained without substantial loss of sensitivity. © Springer Science+Business Media B.V. 2011

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Year:  2011        PMID: 21918814      PMCID: PMC3280329          DOI: 10.1007/s10858-011-9533-1

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  14 in total

1.  Multiple time scale backbone dynamics of homologous thermophilic and mesophilic ribonuclease HI enzymes.

Authors:  Joel A Butterwick; J Patrick Loria; Nathan S Astrof; Christopher D Kroenke; Roger Cole; Mark Rance; Arthur G Palmer
Journal:  J Mol Biol       Date:  2004-06-11       Impact factor: 5.469

2.  A 1H-NMR thermometer suitable for cryoprobes.

Authors:  M Findeisen; T Brand; S Berger
Journal:  Magn Reson Chem       Date:  2007-02       Impact factor: 2.447

3.  A thermodynamic comparison of mesophilic and thermophilic ribonucleases H.

Authors:  J Hollien; S Marqusee
Journal:  Biochemistry       Date:  1999-03-23       Impact factor: 3.162

4.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

5.  A robust and cost-effective method for the production of Val, Leu, Ile (delta 1) methyl-protonated 15N-, 13C-, 2H-labeled proteins.

Authors:  N K Goto; K H Gardner; G A Mueller; R C Willis; L E Kay
Journal:  J Biomol NMR       Date:  1999-04       Impact factor: 2.835

6.  Comparison of 13CH3, 13CH2D, and 13CHD2 methyl labeling strategies in proteins.

Authors:  Jason E Ollerenshaw; Vitali Tugarinov; Nikolai R Skrynnikov; Lewis E Kay
Journal:  J Biomol NMR       Date:  2005-09       Impact factor: 2.835

7.  Line narrowing in methyl-TROSY using zero-quantum 1H-13C NMR spectroscopy.

Authors:  Vitali Tugarinov; Remco Sprangers; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2004-04-21       Impact factor: 15.419

8.  Cross-correlated relaxation enhanced 1H[bond]13C NMR spectroscopy of methyl groups in very high molecular weight proteins and protein complexes.

Authors:  Vitali Tugarinov; Peter M Hwang; Jason E Ollerenshaw; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2003-08-27       Impact factor: 15.419

9.  1H,13C-1H,1H dipolar cross-correlated spin relaxation in methyl groups.

Authors:  Vitali Tugarinov; Lewis E Kay
Journal:  J Biomol NMR       Date:  2004-07       Impact factor: 2.835

10.  Probing slow dynamics in high molecular weight proteins by methyl-TROSY NMR spectroscopy: application to a 723-residue enzyme.

Authors:  Dmitry M Korzhnev; Karin Kloiber; Voula Kanelis; Vitali Tugarinov; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2004-03-31       Impact factor: 15.419

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  11 in total

Review 1.  Chemical exchange in biomacromolecules: past, present, and future.

Authors:  Arthur G Palmer
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

2.  Detection of chemical exchange in methyl groups of macromolecules.

Authors:  Michelle L Gill; Andrew Hsu; Arthur G Palmer
Journal:  J Biomol NMR       Date:  2019-08-12       Impact factor: 2.835

3.  Probing the Broad Time Scale and Heterogeneous Conformational Dynamics in the Catalytic Core of the Arf-GAP ASAP1 via Methyl Adiabatic Relaxation Dispersion.

Authors:  Fa-An Chao; Yifei Li; Yue Zhang; R Andrew Byrd
Journal:  J Am Chem Soc       Date:  2019-07-22       Impact factor: 15.419

4.  Differential isotope-labeling for Leu and Val residues in a protein by E. coli cellular expression using stereo-specifically methyl labeled amino acids.

Authors:  Yohei Miyanoiri; Mitsuhiro Takeda; Kosuke Okuma; Akira M Ono; Tsutomu Terauchi; Masatsune Kainosho
Journal:  J Biomol NMR       Date:  2013-09-21       Impact factor: 2.835

5.  Protein dynamics control the progression and efficiency of the catalytic reaction cycle of the Escherichia coli DNA-repair enzyme AlkB.

Authors:  Burçe Ergel; Michelle L Gill; Lewis Brown; Bomina Yu; Arthur G Palmer; John F Hunt
Journal:  J Biol Chem       Date:  2014-07-20       Impact factor: 5.157

Review 6.  The quiet renaissance of protein nuclear magnetic resonance.

Authors:  Paul J Barrett; Jiang Chen; Min-Kyu Cho; Ji-Hun Kim; Zhenwei Lu; Sijo Mathew; Dungeng Peng; Yuanli Song; Wade D Van Horn; Tiandi Zhuang; Frank D Sönnichsen; Charles R Sanders
Journal:  Biochemistry       Date:  2013-02-12       Impact factor: 3.162

Review 7.  Methyl-Based NMR Spectroscopy Methods for Uncovering Structural Dynamics in Large Proteins and Protein Complexes.

Authors:  Zachary K Boswell; Michael P Latham
Journal:  Biochemistry       Date:  2018-10-26       Impact factor: 3.162

Review 8.  Enzyme dynamics from NMR spectroscopy.

Authors:  Arthur G Palmer
Journal:  Acc Chem Res       Date:  2015-01-09       Impact factor: 22.384

9.  Dynamic regulation of GDP binding to G proteins revealed by magnetic field-dependent NMR relaxation analyses.

Authors:  Yuki Toyama; Hanaho Kano; Yoko Mase; Mariko Yokogawa; Masanori Osawa; Ichio Shimada
Journal:  Nat Commun       Date:  2017-02-22       Impact factor: 14.919

Review 10.  Current NMR Techniques for Structure-Based Drug Discovery.

Authors:  Toshihiko Sugiki; Kyoko Furuita; Toshimichi Fujiwara; Chojiro Kojima
Journal:  Molecules       Date:  2018-01-12       Impact factor: 4.411

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