Literature DB >> 15038751

Probing slow dynamics in high molecular weight proteins by methyl-TROSY NMR spectroscopy: application to a 723-residue enzyme.

Dmitry M Korzhnev1, Karin Kloiber, Voula Kanelis, Vitali Tugarinov, Lewis E Kay.   

Abstract

A new CPMG-based multiple quantum relaxation dispersion experiment is presented for measuring millisecond dynamic processes at side-chain methyl positions in high molecular weight proteins. The experiment benefits from a methyl-TROSY effect in which cancellation of intramethyl dipole fields occurs, leading to methyl (13)C-(1)H correlation spectra of high sensitivity and resolution (Tugarinov, V.; Hwang, P. M.; Ollerenshaw, J. E.; Kay, L. E. J. Am. Chem. Soc. 2003, 125, 10420-10428). The utility of the methodology is illustrated with an application to a highly deuterated, methyl-protonated sample of malate synthase G, an 82 kDa enzyme consisting of a single polypeptide chain. A comparison of the sensitivity obtained using the present approach relative to existing HSQC-type (13)C single quantum dispersion experiments shows a gain of a factor of 5.4 on average, significantly increasing the range of applications for this methodology.

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Year:  2004        PMID: 15038751     DOI: 10.1021/ja039587i

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  90 in total

1.  Estimating side-chain order in methyl-protonated, perdeuterated proteins via multiple-quantum relaxation violated coherence transfer NMR spectroscopy.

Authors:  Hechao Sun; Raquel Godoy-Ruiz; Vitali Tugarinov
Journal:  J Biomol NMR       Date:  2012-03       Impact factor: 2.835

2.  A 2D ¹³C-CEST experiment for studying slowly exchanging protein systems using methyl probes: an application to protein folding.

Authors:  Guillaume Bouvignies; Lewis E Kay
Journal:  J Biomol NMR       Date:  2012-06-12       Impact factor: 2.835

3.  Long-range interaction networks in the function and fidelity of poliovirus RNA-dependent RNA polymerase studied by nuclear magnetic resonance.

Authors:  Xiaorong Yang; Jesse L Welch; Jamie J Arnold; David D Boehr
Journal:  Biochemistry       Date:  2010-11-02       Impact factor: 3.162

Review 4.  Solution NMR Spectroscopy for the Study of Enzyme Allostery.

Authors:  George P Lisi; J Patrick Loria
Journal:  Chem Rev       Date:  2016-01-06       Impact factor: 60.622

5.  Proton-evolved local-field solid-state NMR studies of cytochrome b5 embedded in bicelles, revealing both structural and dynamical information.

Authors:  Ronald Soong; Pieter E S Smith; Jiadi Xu; Kazutoshi Yamamoto; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Am Chem Soc       Date:  2010-04-28       Impact factor: 15.419

6.  Quantitative NMR spectroscopy of supramolecular complexes: dynamic side pores in ClpP are important for product release.

Authors:  Remco Sprangers; Anna Gribun; Peter M Hwang; Walid A Houry; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-01       Impact factor: 11.205

7.  Cross-correlated spin relaxation effects in methyl 1H CPMG-based relaxation dispersion experiments: complications and a simple solution.

Authors:  Dmitry M Korzhnev; Anthony K Mittermaier; Lewis E Kay
Journal:  J Biomol NMR       Date:  2005-04       Impact factor: 2.835

8.  Single Scan 2D NMR Spectroscopy on a 25 T Bitter Magnet.

Authors:  Boaz Shapira; Kiran Shetty; William W Brey; Zhehong Gan; Lucio Frydman
Journal:  Chem Phys Lett       Date:  2007-07-16       Impact factor: 2.328

9.  Protein-mediated antagonism between HIV reverse transcriptase ligands nevirapine and MgATP.

Authors:  Xunhai Zheng; Geoffrey A Mueller; Eugene F DeRose; Robert E London
Journal:  Biophys J       Date:  2013-06-18       Impact factor: 4.033

Review 10.  Using NMR spectroscopy to elucidate the role of molecular motions in enzyme function.

Authors:  George P Lisi; J Patrick Loria
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-12-07       Impact factor: 9.795

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