Literature DB >> 21907611

Choreography of bacteriophage T7 DNA replication.

Seung-Joo Lee1, Charles C Richardson.   

Abstract

The replication system of phage T7 provides a model for DNA replication. Biochemical, structural, and single-molecule analyses together provide insight into replisome mechanics. A complex of polymerase, a processivity factor, and helicase mediates leading strand synthesis. Establishment of the complex requires an interaction of the C-terminal tail of the helicase with the polymerase. During synthesis the complex is stabilized by other interactions to provide for a processivity of 5 kilobase (kb). The C-terminal tail also interacts with a distinct region of the polymerase to captures dissociating polymerase to increase the processivity to >17kb. The lagging strand is synthesized discontinuously within a loop that forms and resolves during each cycle of Okazaki fragment synthesis. The synthesis of a primer as well as the termination of a fragment signal loop resolution.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21907611      PMCID: PMC3195405          DOI: 10.1016/j.cbpa.2011.07.024

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  50 in total

1.  Interaction of bacteriophage T7 gene 4 primase with its template recognition site.

Authors:  D N Frick; C C Richardson
Journal:  J Biol Chem       Date:  1999-12-10       Impact factor: 5.157

2.  Crystal structure of T7 gene 4 ring helicase indicates a mechanism for sequential hydrolysis of nucleotides.

Authors:  M R Singleton; M R Sawaya; T Ellenberger; D B Wigley
Journal:  Cell       Date:  2000-06-09       Impact factor: 41.582

3.  A ring-opening mechanism for DNA binding in the central channel of the T7 helicase-primase protein.

Authors:  P Ahnert; K M Picha; S S Patel
Journal:  EMBO J       Date:  2000-07-03       Impact factor: 11.598

4.  Structure of the gene 2.5 protein, a single-stranded DNA binding protein encoded by bacteriophage T7.

Authors:  T Hollis; J M Stattel; D S Walther; C C Richardson; T Ellenberger
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-31       Impact factor: 11.205

Review 5.  DNA primases.

Authors:  D N Frick; C C Richardson
Journal:  Annu Rev Biochem       Date:  2001       Impact factor: 23.643

6.  Interaction of adjacent primase domains within the hexameric gene 4 helicase-primase of bacteriophage T7.

Authors:  Seung-Joo Lee; Charles C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-12       Impact factor: 11.205

7.  Conformational dynamics of bacteriophage T7 DNA polymerase and its processivity factor, Escherichia coli thioredoxin.

Authors:  Barak Akabayov; Sabine R Akabayov; Seung-Joo Lee; Stanley Tabor; Arkadiusz W Kulczyk; Charles C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-09       Impact factor: 11.205

8.  Lagging strand synthesis in coordinated DNA synthesis by bacteriophage t7 replication proteins.

Authors:  Joonsoo Lee; Paul D Chastain; Jack D Griffith; Charles C Richardson
Journal:  J Mol Biol       Date:  2002-02-08       Impact factor: 5.469

9.  Template recognition sequence for RNA primer synthesis by gene 4 protein of bacteriophage T7.

Authors:  S Tabor; C C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  1981-01       Impact factor: 11.205

10.  The DNA-unwinding mechanism of the ring helicase of bacteriophage T7.

Authors:  Yong-Joo Jeong; Mikhail K Levin; Smita S Patel
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-03       Impact factor: 11.205

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  38 in total

1.  Insights into Okazaki fragment synthesis by the T4 replisome: the fate of lagging-strand holoenzyme components and their influence on Okazaki fragment size.

Authors:  Danqi Chen; Hongjun Yue; Michelle M Spiering; Stephen J Benkovic
Journal:  J Biol Chem       Date:  2013-05-31       Impact factor: 5.157

2.  Many ways to loop DNA.

Authors:  Jack D Griffith
Journal:  J Biol Chem       Date:  2013-09-04       Impact factor: 5.157

3.  The Essential, Ubiquitous Single-Stranded DNA-Binding Proteins.

Authors:  Marcos T Oliveira; Grzegorz L Ciesielski
Journal:  Methods Mol Biol       Date:  2021

4.  CMG-Pol epsilon dynamics suggests a mechanism for the establishment of leading-strand synthesis in the eukaryotic replisome.

Authors:  Jin Chuan Zhou; Agnieszka Janska; Panchali Goswami; Ludovic Renault; Ferdos Abid Ali; Abhay Kotecha; John F X Diffley; Alessandro Costa
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-03       Impact factor: 11.205

Review 5.  A mechanistic study of helicases with magnetic traps.

Authors:  Samar Hodeib; Saurabh Raj; Maria Manosas; Weiting Zhang; Debjani Bagchi; Bertrand Ducos; Francesca Fiorini; Joanne Kanaan; Hervé Le Hir; Jean-François Allemand; David Bensimon; Vincent Croquette
Journal:  Protein Sci       Date:  2017-06-13       Impact factor: 6.725

6.  Primer release is the rate-limiting event in lagging-strand synthesis mediated by the T7 replisome.

Authors:  Alfredo J Hernandez; Seung-Joo Lee; Charles C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-09       Impact factor: 11.205

7.  Unraveling Reversible DNA Cross-Links with a Biological Machine.

Authors:  Shane R Byrne; Steven E Rokita
Journal:  Chem Res Toxicol       Date:  2020-11-05       Impact factor: 3.739

8.  Catalytically inactive T7 DNA polymerase imposes a lethal replication roadblock.

Authors:  Alfredo J Hernandez; Seung-Joo Lee; Seungwoo Chang; Jaehun A Lee; Joseph J Loparo; Charles C Richardson
Journal:  J Biol Chem       Date:  2020-05-19       Impact factor: 5.157

9.  Chimeric proteins constructed from bacteriophage T7 gp4 and a putative primase-helicase from Arabidopsis thaliana.

Authors:  Jamie B Towle-Weicksel; Yun Cao; Lisa J Crislip; David L Thurlow; Donald J Crampton
Journal:  Mol Biol Rep       Date:  2014-08-07       Impact factor: 2.316

10.  Discrete interactions between bacteriophage T7 primase-helicase and DNA polymerase drive the formation of a priming complex containing two copies of DNA polymerase.

Authors:  Jamie R Wallen; Jerzy Majka; Tom Ellenberger
Journal:  Biochemistry       Date:  2013-05-31       Impact factor: 3.162

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