Literature DB >> 24005675

Many ways to loop DNA.

Jack D Griffith1.   

Abstract

In the 1960s, I developed methods for directly visualizing DNA and DNA-protein complexes using an electron microscope. This made it possible to examine the shape of DNA and to visualize proteins as they fold and loop DNA. Early applications included the first visualization of true nucleosomes and linkers and the demonstration that repeating tracts of adenines can cause a curvature in DNA. The binding of DNA repair proteins, including p53 and BRCA2, has been visualized at three- and four-way junctions in DNA. The trombone model of DNA replication was directly verified, and the looping of DNA at telomeres was discovered.

Entities:  

Keywords:  Chromatin; DNA; Electron Microscopy (EM); Nucleotide; Telomeres

Mesh:

Substances:

Year:  2013        PMID: 24005675      PMCID: PMC3795270          DOI: 10.1074/jbc.X113.515981

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  79 in total

1.  Operating on chromatin, a colorful language where context matters.

Authors:  Kathryn E Gardner; C David Allis; Brian D Strahl
Journal:  J Mol Biol       Date:  2011-01-25       Impact factor: 5.469

2.  An octamer of histones in chromatin and free in solution.

Authors:  J O Thomas; R D Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  1975-07       Impact factor: 11.205

3.  Cloning of uvrA, lexC and ssb genes of Escherichia coli.

Authors:  A Sancar; W D Rupp
Journal:  Biochem Biophys Res Commun       Date:  1979-09-12       Impact factor: 3.575

4.  Curved helix segments can uniquely orient the topology of supertwisted DNA.

Authors:  C H Laundon; J D Griffith
Journal:  Cell       Date:  1988-02-26       Impact factor: 41.582

5.  Bidirectional excision in methyl-directed mismatch repair.

Authors:  M Grilley; J Griffith; P Modrich
Journal:  J Biol Chem       Date:  1993-06-05       Impact factor: 5.157

6.  Preferential nucleosome assembly at DNA triplet repeats from the myotonic dystrophy gene.

Authors:  Y H Wang; S Amirhaeri; S Kang; R D Wells; J D Griffith
Journal:  Science       Date:  1994-07-29       Impact factor: 47.728

Review 7.  Timing, coordination, and rhythm: acrobatics at the DNA replication fork.

Authors:  Samir M Hamdan; Antoine M van Oijen
Journal:  J Biol Chem       Date:  2010-04-09       Impact factor: 5.157

8.  Visualization of a tertiary structural domain of the Tetrahymena group I intron by electron microscopy.

Authors:  Y H Wang; F L Murphy; T R Cech; J D Griffith
Journal:  J Mol Biol       Date:  1994-02-11       Impact factor: 5.469

9.  Spliced segments at the 5' terminus of adenovirus 2 late mRNA.

Authors:  S M Berget; C Moore; P A Sharp
Journal:  Proc Natl Acad Sci U S A       Date:  1977-08       Impact factor: 11.205

10.  phiX174 cistron A protein is a multifunctional enzyme in DNA replication.

Authors:  S Eisenberg; J Griffith; A Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  1977-08       Impact factor: 11.205

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  4 in total

Review 1.  RecBCD is required to complete chromosomal replication: Implications for double-strand break frequencies and repair mechanisms.

Authors:  Justin Courcelle; Brian M Wendel; Dena D Livingstone; Charmain T Courcelle
Journal:  DNA Repair (Amst)       Date:  2015-05-02

2.  Visualizing the Path of DNA through Proteins Using DREEM Imaging.

Authors:  Dong Wu; Parminder Kaur; Zimeng M Li; Kira C Bradford; Hong Wang; Dorothy A Erie
Journal:  Mol Cell       Date:  2016-01-07       Impact factor: 17.970

3.  A New View of the T-Loop Junction: Implications for Self-Primed Telomere Extension, Expansion of Disease-Related Nucleotide Repeat Blocks, and Telomere Evolution.

Authors:  Lubomir Tomaska; Jozef Nosek; Anirban Kar; Smaranda Willcox; Jack D Griffith
Journal:  Front Genet       Date:  2019-08-14       Impact factor: 4.599

4.  Transcription of telomeric DNA leads to high levels of homologous recombination and t-loops.

Authors:  Anirban Kar; Smaranda Willcox; Jack D Griffith
Journal:  Nucleic Acids Res       Date:  2016-09-07       Impact factor: 16.971

  4 in total

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