Literature DB >> 33847949

The Essential, Ubiquitous Single-Stranded DNA-Binding Proteins.

Marcos T Oliveira1, Grzegorz L Ciesielski2.   

Abstract

Maintenance of genomes is fundamental for all living organisms. The diverse processes related to genome maintenance entail the management of various intermediate structures, which may be deleterious if unresolved. The most frequent intermediate structures that result from the melting of the DNA duplex are single-stranded (ss) DNA stretches. These are thermodynamically less stable and can spontaneously fold into secondary structures, which may obstruct a variety of genome processes. In addition, ssDNA is more prone to breaking, which may lead to the formation of deletions or DNA degradation. Single-stranded DNA-binding proteins (SSBs) bind and stabilize ssDNA, preventing the abovementioned deleterious consequences and recruiting the appropriate machinery to resolve that intermediate molecule. They are present in all forms of life and are essential for their viability, with very few exceptions. Here we present an introductory chapter to a volume of the Methods in Molecular Biology dedicated to SSBs, in which we provide a general description of SSBs from various taxa.

Keywords:  Genome maintenance; Recombination; Repair; Replication; Single-stranded DNA intermediates

Year:  2021        PMID: 33847949     DOI: 10.1007/978-1-0716-1290-3_1

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  168 in total

Review 1.  Nucleic acid recognition by OB-fold proteins.

Authors:  Douglas L Theobald; Rachel M Mitton-Fry; Deborah S Wuttke
Journal:  Annu Rev Biophys Biomol Struct       Date:  2003-02-18

Review 2.  Single-molecule views of protein movement on single-stranded DNA.

Authors:  Taekjip Ha; Alexander G Kozlov; Timothy M Lohman
Journal:  Annu Rev Biophys       Date:  2012-02-23       Impact factor: 12.981

3.  Kinetic mechanism of direct transfer of Escherichia coli SSB tetramers between single-stranded DNA molecules.

Authors:  Alexander G Kozlov; Timothy M Lohman
Journal:  Biochemistry       Date:  2002-10-01       Impact factor: 3.162

4.  Molecular determinants of the interactions between proteins and ssDNA.

Authors:  Garima Mishra; Yaakov Levy
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-08       Impact factor: 11.205

5.  Functions of single-strand DNA-binding proteins in DNA replication, recombination, and repair.

Authors:  Aimee H Marceau
Journal:  Methods Mol Biol       Date:  2012

6.  Ultrafast redistribution of E. coli SSB along long single-stranded DNA via intersegment transfer.

Authors:  Kyung Suk Lee; Amanda B Marciel; Alexander G Kozlov; Charles M Schroeder; Timothy M Lohman; Taekjip Ha
Journal:  J Mol Biol       Date:  2014-05-02       Impact factor: 5.469

7.  SSB functions as a sliding platform that migrates on DNA via reptation.

Authors:  Ruobo Zhou; Alexander G Kozlov; Rahul Roy; Jichuan Zhang; Sergey Korolev; Timothy M Lohman; Taekjip Ha
Journal:  Cell       Date:  2011-07-22       Impact factor: 41.582

8.  Diffusion of human replication protein A along single-stranded DNA.

Authors:  Binh Nguyen; Joshua Sokoloski; Roberto Galletto; Elliot L Elson; Marc S Wold; Timothy M Lohman
Journal:  J Mol Biol       Date:  2014-07-22       Impact factor: 5.469

9.  OB(oligonucleotide/oligosaccharide binding)-fold: common structural and functional solution for non-homologous sequences.

Authors:  A G Murzin
Journal:  EMBO J       Date:  1993-03       Impact factor: 11.598

10.  SSB protein diffusion on single-stranded DNA stimulates RecA filament formation.

Authors:  Rahul Roy; Alexander G Kozlov; Timothy M Lohman; Taekjip Ha
Journal:  Nature       Date:  2009-10-11       Impact factor: 49.962

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  1 in total

Review 1.  Small Prokaryotic DNA-Binding Proteins Protect Genome Integrity throughout the Life Cycle.

Authors:  Katja Molan; Darja Žgur Bertok
Journal:  Int J Mol Sci       Date:  2022-04-04       Impact factor: 5.923

  1 in total

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