Literature DB >> 21903166

Characterization of lipid matrices for membrane protein crystallization by high-throughput small angle X-ray scattering.

Jeremiah S Joseph1, Wei Liu, Joshua Kunken, Thomas M Weiss, Hiro Tsuruta, Vadim Cherezov.   

Abstract

The lipidic cubic phase (LCP) has repeatedly proven to serve as a successful membrane-mimetic matrix for a variety of difficult-to-crystallize membrane proteins. While monoolein has been the predominant lipid of choice, there is a growing need for the characterization and use of other LCP host lipids, allowing exploration of a range of structural parameters such as bilayer thickness and curvature for optimal insertion, stability and crystallogenesis of membrane proteins. Here, we describe the development of a high-throughput (HT) pipeline to employ small angle X-ray scattering (SAXS) - the most direct technique to identify lipid mesophases and measure their structural parameters - to interrogate rapidly a large number of lipid samples under a variety of conditions, similar to those encountered during crystallization. Leveraging the identical setup format for LCP crystallization trials, this method allows the quickly assessment of lipid matrices for their utility in membrane protein crystallization, and could inform the tailoring of lipid and precipitant conditions to overcome specific crystallization challenges. As proof of concept, we present HT LCP-SAXS analysis of lipid samples made of monoolein with and without cholesterol, and of monovaccenin, equilibrated with solutions used for crystallization trials and LCP fluorescence recovery after photobleaching (FRAP) experiments.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21903166      PMCID: PMC3243793          DOI: 10.1016/j.ymeth.2011.08.013

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  29 in total

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Journal:  Science       Date:  2010-10-07       Impact factor: 47.728

2.  Rational design of lipid for membrane protein crystallization.

Authors:  Yohann Misquitta; Vadim Cherezov; Fabien Havas; Suzanne Patterson; Jakkam M Mohan; Angela J Wells; David J Hart; Martin Caffrey
Journal:  J Struct Biol       Date:  2004-11       Impact factor: 2.867

3.  High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor.

Authors:  Vadim Cherezov; Daniel M Rosenbaum; Michael A Hanson; Søren G F Rasmussen; Foon Sun Thian; Tong Sun Kobilka; Hee-Jung Choi; Peter Kuhn; William I Weis; Brian K Kobilka; Raymond C Stevens
Journal:  Science       Date:  2007-10-25       Impact factor: 47.728

4.  LCP-FRAP Assay for Pre-Screening Membrane Proteins for in Meso Crystallization.

Authors:  Vadim Cherezov; Jeffrey Liu; Mark Griffith; Michael A Hanson; Raymond C Stevens
Journal:  Cryst Growth Des       Date:  2008       Impact factor: 4.076

5.  Membrane protein crystallization in lipidic mesophases with tailored bilayers.

Authors:  Lisa V Misquitta; Yohann Misquitta; Vadim Cherezov; Orla Slattery; Jakkam M Mohan; David Hart; Mariya Zhalnina; William A Cramer; Martin Caffrey
Journal:  Structure       Date:  2004-12       Impact factor: 5.006

6.  In meso crystal structure and docking simulations suggest an alternative proteoglycan binding site in the OpcA outer membrane adhesin.

Authors:  Vadim Cherezov; Wei Liu; Jeremy P Derrick; Binquan Luan; Aleksei Aksimentiev; Vsevolod Katritch; Martin Caffrey
Journal:  Proteins       Date:  2008-04

7.  Membrane protein crystallization in meso: lipid type-tailoring of the cubic phase.

Authors:  Vadim Cherezov; Jeffrey Clogston; Yohann Misquitta; Wissam Abdel-Gawad; Martin Caffrey
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

8.  A lipidic-sponge phase screen for membrane protein crystallization.

Authors:  Annemarie B Wöhri; Linda C Johansson; Pia Wadsten-Hindrichsen; Weixiao Y Wahlgren; Gerhard Fischer; Rob Horsefield; Gergely Katona; Maria Nyblom; Fredrik Oberg; Gillian Young; Richard J Cogdell; Niall J Fraser; Sven Engström; Richard Neutze
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9.  The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist.

Authors:  Veli-Pekka Jaakola; Mark T Griffith; Michael A Hanson; Vadim Cherezov; Ellen Y T Chien; J Robert Lane; Adriaan P Ijzerman; Raymond C Stevens
Journal:  Science       Date:  2008-10-02       Impact factor: 47.728

10.  High resolution structure of the ba3 cytochrome c oxidase from Thermus thermophilus in a lipidic environment.

Authors:  Theresa Tiefenbrunn; Wei Liu; Ying Chen; Vsevolod Katritch; C David Stout; James A Fee; Vadim Cherezov
Journal:  PLoS One       Date:  2011-07-21       Impact factor: 3.240

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  12 in total

1.  Preparation of microcrystals in lipidic cubic phase for serial femtosecond crystallography.

Authors:  Wei Liu; Andrii Ishchenko; Vadim Cherezov
Journal:  Nat Protoc       Date:  2014-08-14       Impact factor: 13.491

2.  High-resolution structure of a membrane protein transferred from amphipol to a lipidic mesophase.

Authors:  V Polovinkin; I Gushchin; M Sintsov; E Round; T Balandin; P Chervakov; V Shevchenko; P Utrobin; A Popov; V Borshchevskiy; A Mishin; A Kuklin; D Willbold; V Chupin; J-L Popot; V Gordeliy
Journal:  J Membr Biol       Date:  2014-09-06       Impact factor: 1.843

3.  Anomalous Diffusion Characterization by Fourier Transform-FRAP with Patterned Illumination.

Authors:  Andreas C Geiger; Casey J Smith; Nita Takanti; Dustin M Harmon; Mark S Carlsen; Garth J Simpson
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4.  Chemically Stable Lipids for Membrane Protein Crystallization.

Authors:  Andrii Ishchenko; Lingling Peng; Egor Zinovev; Alexey Vlasov; Sung Chang Lee; Alexander Kuklin; Alexey Mishin; Valentin Borshchevskiy; Qinghai Zhang; Vadim Cherezov
Journal:  Cryst Growth Des       Date:  2017-05-12       Impact factor: 4.076

5.  An X-ray transparent microfluidic platform for screening of the phase behavior of lipidic mesophases.

Authors:  Daria S Khvostichenko; Elena Kondrashkina; Sarah L Perry; Ashtamurthy S Pawate; Keith Brister; Paul J A Kenis
Journal:  Analyst       Date:  2013-07-24       Impact factor: 4.616

Review 6.  Lipidic cubic phase technologies for membrane protein structural studies.

Authors:  Vadim Cherezov
Journal:  Curr Opin Struct Biol       Date:  2011-07-19       Impact factor: 6.809

7.  3D-printed SAXS chamber for controlled in situ dialysis and optical characterization.

Authors:  Tamara Ehm; Julian Philipp; Martin Barkey; Martina Ober; Achim Theo Brinkop; David Simml; Miriam von Westphalen; Bert Nickel; Roy Beck; Joachim O Rädler
Journal:  J Synchrotron Radiat       Date:  2022-05-25       Impact factor: 2.557

8.  Using macromolecular-crystallography beamline and microfluidic platform for small-angle diffraction studies of lipidic matrices for membrane-protein crystallization.

Authors:  E Kondrashkina; D S Khvostichenko; S L Perry; J Von Osinski; P J A Kenis; K Brister
Journal:  J Phys Conf Ser       Date:  2013

9.  Effects of detergent β-octylglucoside and phosphate salt solutions on phase behavior of monoolein mesophases.

Authors:  Daria S Khvostichenko; Johnathan J D Ng; Sarah L Perry; Monisha Menon; Paul J A Kenis
Journal:  Biophys J       Date:  2013-10-15       Impact factor: 4.033

10.  Macrophages sequester clofazimine in an intracellular liquid crystal-like supramolecular organization.

Authors:  Jason Baik; Gus R Rosania
Journal:  PLoS One       Date:  2012-10-11       Impact factor: 3.240

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