Literature DB >> 19234616

LCP-FRAP Assay for Pre-Screening Membrane Proteins for in Meso Crystallization.

Vadim Cherezov1, Jeffrey Liu, Mark Griffith, Michael A Hanson, Raymond C Stevens.   

Abstract

Fluorescence recovery after photobleaching was used to study the diffusion of two integral membrane proteins, bacteriorhodopsin and beta2-adrenergic receptor, in lipidic cubic phase (LCP). We found that the diffusion properties within the LCP matrix strongly depend on the protein construct and applied screening conditions. Common precipitants often induce restriction on diffusion of proteins in LCP and thereby impede their chances for crystallization. A high protein mobile fraction and a fast diffusion rate correlate very well with known crystallization conditions. Using this knowledge, one can now pre-screen precipitant conditions with microgram quantities of material to rule out conditions that are not conducive to diffusion, nucleation, and crystal growth. The results of this assay will narrow membrane protein crystallization space by identifying suitable protein constructs, stabilizing compounds and precipitant conditions amenable to in meso crystallization. Crystallization pre-screening will significantly increase the chances of obtaining initial crystal hits, expediting efforts in generating high-resolution structures of challenging membrane protein targets.

Entities:  

Year:  2008        PMID: 19234616      PMCID: PMC2645078          DOI: 10.1021/cg800778j

Source DB:  PubMed          Journal:  Cryst Growth Des        ISSN: 1528-7483            Impact factor:   4.076


  32 in total

1.  Lipidic cubic phase crystal structure of the photosynthetic reaction centre from Rhodobacter sphaeroides at 2.35A resolution.

Authors:  Gergely Katona; Ulf Andréasson; Ehud M Landau; Lars-Erik Andréasson; Richard Neutze
Journal:  J Mol Biol       Date:  2003-08-15       Impact factor: 5.469

2.  Monomer-oligomer equilibrium of bacteriorhodopsin in reconstituted proteoliposomes. A freeze-fracture electron microscope study.

Authors:  T Gulik-Krzywicki; M Seigneuret; J L Rigaud
Journal:  J Biol Chem       Date:  1987-11-15       Impact factor: 5.157

3.  Fluorescence correlation spectroscopy. II. An experimental realization.

Authors:  D Magde; E L Elson; W W Webb
Journal:  Biopolymers       Date:  1974-01       Impact factor: 2.505

4.  Theoretical analysis of fluorescence photobleaching recovery experiments.

Authors:  D M Soumpasis
Journal:  Biophys J       Date:  1983-01       Impact factor: 4.033

5.  Lipid composition of integral purple membrane by 1H and 31P NMR.

Authors:  Christian Renner; Brigitte Kessler; Dieter Oesterhelt
Journal:  J Lipid Res       Date:  2005-06-01       Impact factor: 5.922

6.  In meso crystal structure and docking simulations suggest an alternative proteoglycan binding site in the OpcA outer membrane adhesin.

Authors:  Vadim Cherezov; Wei Liu; Jeremy P Derrick; Binquan Luan; Aleksei Aksimentiev; Vsevolod Katritch; Martin Caffrey
Journal:  Proteins       Date:  2008-04

7.  Lipid and water diffusion in bicontinuous cubic phases measured by NMR.

Authors:  P O Eriksson; G Lindblom
Journal:  Biophys J       Date:  1993-01       Impact factor: 4.033

8.  Membrane protein crystallization in meso: lipid type-tailoring of the cubic phase.

Authors:  Vadim Cherezov; Jeffrey Clogston; Yohann Misquitta; Wissam Abdel-Gawad; Martin Caffrey
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

9.  A lipidic-sponge phase screen for membrane protein crystallization.

Authors:  Annemarie B Wöhri; Linda C Johansson; Pia Wadsten-Hindrichsen; Weixiao Y Wahlgren; Gerhard Fischer; Rob Horsefield; Gergely Katona; Maria Nyblom; Fredrik Oberg; Gillian Young; Richard J Cogdell; Niall J Fraser; Sven Engström; Richard Neutze
Journal:  Structure       Date:  2008-07       Impact factor: 5.006

10.  The condensing effect of cholesterol in lipid bilayers.

Authors:  Wei-Chin Hung; Ming-Tao Lee; Fang-Yu Chen; Huey W Huang
Journal:  Biophys J       Date:  2007-03-16       Impact factor: 4.033

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  28 in total

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Authors:  John A Salon; David T Lodowski; Krzysztof Palczewski
Journal:  Pharmacol Rev       Date:  2011-12       Impact factor: 25.468

Review 3.  Methodological advances: the unsung heroes of the GPCR structural revolution.

Authors:  Eshan Ghosh; Punita Kumari; Deepika Jaiman; Arun K Shukla
Journal:  Nat Rev Mol Cell Biol       Date:  2015-01-15       Impact factor: 94.444

4.  Production of Chemokine/Chemokine Receptor Complexes for Structural Biophysical Studies.

Authors:  Martin Gustavsson; Yi Zheng; Tracy M Handel
Journal:  Methods Enzymol       Date:  2015-12-14       Impact factor: 1.600

5.  Anomalous Diffusion Characterization by Fourier Transform-FRAP with Patterned Illumination.

Authors:  Andreas C Geiger; Casey J Smith; Nita Takanti; Dustin M Harmon; Mark S Carlsen; Garth J Simpson
Journal:  Biophys J       Date:  2020-07-24       Impact factor: 4.033

6.  Development of an Automated High Throughput LCP-FRAP Assay to Guide Membrane Protein Crystallization in Lipid Mesophases.

Authors:  Fei Xu; Wei Liu; Michael A Hanson; Raymond C Stevens; Vadim Cherezov
Journal:  Cryst Growth Des       Date:  2011-04-06       Impact factor: 4.076

7.  Characterization of lipid matrices for membrane protein crystallization by high-throughput small angle X-ray scattering.

Authors:  Jeremiah S Joseph; Wei Liu; Joshua Kunken; Thomas M Weiss; Hiro Tsuruta; Vadim Cherezov
Journal:  Methods       Date:  2011-08-27       Impact factor: 3.608

Review 8.  Serial Femtosecond Crystallography of G Protein-Coupled Receptors.

Authors:  Benjamin Stauch; Vadim Cherezov
Journal:  Annu Rev Biophys       Date:  2018-03-15       Impact factor: 12.981

9.  Sequential purification and characterization of Torpedo californica nAChR-DC supplemented with CHS for high-resolution crystallization studies.

Authors:  Rafael Maldonado-Hernández; Orestes Quesada; José O Colón-Sáez; José A Lasalde-Dominicci
Journal:  Anal Biochem       Date:  2020-08-04       Impact factor: 3.365

10.  Fabrication of X-ray compatible microfluidic platforms for protein crystallization.

Authors:  Sudipto Guha; Sarah L Perry; Ashtamurthy S Pawate; Paul J A Kenis
Journal:  Sens Actuators B Chem       Date:  2012-11       Impact factor: 7.460

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