Literature DB >> 29290736

Chemically Stable Lipids for Membrane Protein Crystallization.

Andrii Ishchenko1, Lingling Peng2, Egor Zinovev3, Alexey Vlasov3, Sung Chang Lee2, Alexander Kuklin3,4, Alexey Mishin5, Valentin Borshchevskiy3,6, Qinghai Zhang2, Vadim Cherezov1,5.   

Abstract

Lipidic cubic phase (LCP) has been widely recognized as a promising membrane-mimicking matrix for biophysical studies of membrane proteins and their crystallization in a lipidic environment. Application of this material to a wide variety of membrane proteins, however, is hindered due to a limited number of available host lipids, mostly monoacylglycerols (MAGs). Here, we designed, synthesized and characterized a series of chemically stable lipids resistant to hydrolysis, with properties complementary to the widely used MAGs. In order to assess their potential to serve as host lipids for crystallization, we characterized the phase properties and lattice parameters of mesophases made of two most promising lipids at a variety of different conditions by polarized light microscopy and small-angle X-ray scattering. Both lipids showed remarkable chemical stability and an extended LCP region in the phase diagram covering a wide range of temperatures down to 4 °C. One of these lipids has been used for crystallization and structure determination of a prototypical membrane protein bacteriorhodopsin at 4 °C and 20 °C.

Entities:  

Year:  2017        PMID: 29290736      PMCID: PMC5743208          DOI: 10.1021/acs.cgd.7b00458

Source DB:  PubMed          Journal:  Cryst Growth Des        ISSN: 1528-7483            Impact factor:   4.076


  40 in total

1.  Phase behavior of a monoacylglycerol: (myverol 18-99K)/water system.

Authors:  J Clogston; J Rathman; D Tomasko; H Walker; M Caffrey
Journal:  Chem Phys Lipids       Date:  2000-10       Impact factor: 3.329

2.  Rational design of lipid for membrane protein crystallization.

Authors:  Yohann Misquitta; Vadim Cherezov; Fabien Havas; Suzanne Patterson; Jakkam M Mohan; Angela J Wells; David J Hart; Martin Caffrey
Journal:  J Struct Biol       Date:  2004-11       Impact factor: 2.867

3.  High-resolution structure of a membrane protein transferred from amphipol to a lipidic mesophase.

Authors:  V Polovinkin; I Gushchin; M Sintsov; E Round; T Balandin; P Chervakov; V Shevchenko; P Utrobin; A Popov; V Borshchevskiy; A Mishin; A Kuklin; D Willbold; V Chupin; J-L Popot; V Gordeliy
Journal:  J Membr Biol       Date:  2014-09-06       Impact factor: 1.843

4.  Low-dose X-ray radiation induces structural alterations in proteins.

Authors:  Valentin Borshchevskiy; Ekaterina Round; Ivan Erofeev; Martin Weik; Andrii Ishchenko; Ivan Gushchin; Alexey Mishin; Dieter Willbold; Georg Büldt; Valentin Gordeliy
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-09-27

5.  Membrane protein crystallization in lipidic mesophases with tailored bilayers.

Authors:  Lisa V Misquitta; Yohann Misquitta; Vadim Cherezov; Orla Slattery; Jakkam M Mohan; David Hart; Mariya Zhalnina; William A Cramer; Martin Caffrey
Journal:  Structure       Date:  2004-12       Impact factor: 5.006

6.  Crystallographic structure of the K intermediate of bacteriorhodopsin: conservation of free energy after photoisomerization of the retinal.

Authors:  Brigitte Schobert; Jill Cupp-Vickery; Viktor Hornak; Steven Smith; Janos Lanyi
Journal:  J Mol Biol       Date:  2002-08-23       Impact factor: 5.469

7.  Integration, scaling, space-group assignment and post-refinement.

Authors:  Wolfgang Kabsch
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

8.  Membrane protein crystallization in meso: lipid type-tailoring of the cubic phase.

Authors:  Vadim Cherezov; Jeffrey Clogston; Yohann Misquitta; Wissam Abdel-Gawad; Martin Caffrey
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

9.  The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist.

Authors:  Veli-Pekka Jaakola; Mark T Griffith; Michael A Hanson; Vadim Cherezov; Ellen Y T Chien; J Robert Lane; Adriaan P Ijzerman; Raymond C Stevens
Journal:  Science       Date:  2008-10-02       Impact factor: 47.728

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  10 in total

Review 1.  Chemical tools for membrane protein structural biology.

Authors:  Qinghai Zhang; Vadim Cherezov
Journal:  Curr Opin Struct Biol       Date:  2019-07-05       Impact factor: 6.809

Review 2.  ATP synthase FOF1 structure, function, and structure-based drug design.

Authors:  Alexey V Vlasov; Stepan D Osipov; Nikolay A Bondarev; Vladimir N Uversky; Valentin I Borshchevskiy; Mikhail F Yanyushin; Ilya V Manukhov; Andrey V Rogachev; Anastasiia D Vlasova; Nikolay S Ilyinsky; Alexandr I Kuklin; Norbert A Dencher; Valentin I Gordeliy
Journal:  Cell Mol Life Sci       Date:  2022-03-06       Impact factor: 9.261

3.  Structure Determination from Lipidic Cubic Phase Embedded Microcrystals by MicroED.

Authors:  Lan Zhu; Guanhong Bu; Liang Jing; Dan Shi; Ming-Yue Lee; Tamir Gonen; Wei Liu; Brent L Nannenga
Journal:  Structure       Date:  2020-07-30       Impact factor: 5.006

Review 4.  Serial Femtosecond Crystallography of G Protein-Coupled Receptors.

Authors:  Benjamin Stauch; Vadim Cherezov
Journal:  Annu Rev Biophys       Date:  2018-03-15       Impact factor: 12.981

5.  Shortening injection matrix for serial crystallography.

Authors:  Ki Hyun Nam
Journal:  Sci Rep       Date:  2020-01-09       Impact factor: 4.379

6.  Isoprenoid-chained lipid EROCOC17+4: a new matrix for membrane protein crystallization and a crystal delivery medium in serial femtosecond crystallography.

Authors:  Kentaro Ihara; Masakatsu Hato; Takanori Nakane; Keitaro Yamashita; Tomomi Kimura-Someya; Toshiaki Hosaka; Yoshiko Ishizuka-Katsura; Rie Tanaka; Tomoyuki Tanaka; Michihiro Sugahara; Kunio Hirata; Masaki Yamamoto; Osamu Nureki; Kensuke Tono; Eriko Nango; So Iwata; Mikako Shirouzu
Journal:  Sci Rep       Date:  2020-11-09       Impact factor: 4.379

7.  Lard Injection Matrix for Serial Crystallography.

Authors:  Ki Hyun Nam
Journal:  Int J Mol Sci       Date:  2020-08-19       Impact factor: 5.923

8.  Mechanisms of membrane protein crystallization in 'bicelles'.

Authors:  Tatiana N Murugova; Oleksandr I Ivankov; Yury L Ryzhykau; Dmytro V Soloviov; Kirill V Kovalev; Daria V Skachkova; Adam Round; Christian Baeken; Andrii V Ishchenko; Oleksandr A Volkov; Andrey V Rogachev; Alexey V Vlasov; Alexander I Kuklin; Valentin I Gordeliy
Journal:  Sci Rep       Date:  2022-06-30       Impact factor: 4.996

9.  Design of ultra-swollen lipidic mesophases for the crystallization of membrane proteins with large extracellular domains.

Authors:  Alexandru Zabara; Josephine Tse Yin Chong; Isabelle Martiel; Laura Stark; Brett A Cromer; Chiara Speziale; Calum John Drummond; Raffaele Mezzenga
Journal:  Nat Commun       Date:  2018-02-07       Impact factor: 14.919

Review 10.  Sample Delivery Media for Serial Crystallography.

Authors:  Ki Hyun Nam
Journal:  Int J Mol Sci       Date:  2019-03-04       Impact factor: 5.923

  10 in total

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