Literature DB >> 15477097

Rational design of lipid for membrane protein crystallization.

Yohann Misquitta1, Vadim Cherezov, Fabien Havas, Suzanne Patterson, Jakkam M Mohan, Angela J Wells, David J Hart, Martin Caffrey.   

Abstract

The lipidic cubic phase has been used to grow crystals of membrane proteins for high-resolution structure determination. However, the original, so-called, in meso method does not work reliably at low temperatures, where proteins are generally more stable, because the hosting lipid turns solid. The need existed therefore for a lipid that forms the cubic phase and that supports crystal growth at low temperatures. We created a database of phase diagrams and used it to design such a lipid. X-ray diffraction showed that the new lipid exhibits designed phase behavior. Further, it produces diffraction quality membrane protein crystals by the in meso method at 6 degrees C. This demonstrates that lipidic materials, like their protein counterparts are amenable to rational design. The same approach as used in this study should find application in extending the range of membrane proteins crystallizable by the in meso method and in tailoring transport of cubic phases for controlled delivery and uptake.

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Year:  2004        PMID: 15477097     DOI: 10.1016/j.jsb.2004.06.008

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  35 in total

1.  The cubicon method for concentrating membrane proteins in the cubic mesophase.

Authors:  Pikyee Ma; Dietmar Weichert; Luba A Aleksandrov; Timothy J Jensen; John R Riordan; Xiangyu Liu; Brian K Kobilka; Martin Caffrey
Journal:  Nat Protoc       Date:  2017-08-03       Impact factor: 13.491

2.  LCP-Tm: an assay to measure and understand stability of membrane proteins in a membrane environment.

Authors:  Wei Liu; Michael A Hanson; Raymond C Stevens; Vadim Cherezov
Journal:  Biophys J       Date:  2010-04-21       Impact factor: 4.033

Review 3.  New amphiphiles for membrane protein structural biology.

Authors:  Qinghai Zhang; Houchao Tao; Wen-Xu Hong
Journal:  Methods       Date:  2011-09-20       Impact factor: 3.608

4.  An investigation into the ability to define transmembrane protein spans using the biophysical properties of amino acid residues.

Authors:  Onkabetse Daman; James Wallace; Frederick Harris; David A Phoenix
Journal:  Mol Cell Biochem       Date:  2005-07       Impact factor: 3.396

5.  Host Lipid and Temperature as Important Screening Variables for Crystallizing Integral Membrane Proteins in Lipidic Mesophases. Trials with Diacylglycerol Kinase.

Authors:  Dianfan Li; Syed T A Shah; Martin Caffrey
Journal:  Cryst Growth Des       Date:  2013-07-03       Impact factor: 4.076

6.  Preparation of microcrystals in lipidic cubic phase for serial femtosecond crystallography.

Authors:  Wei Liu; Andrii Ishchenko; Vadim Cherezov
Journal:  Nat Protoc       Date:  2014-08-14       Impact factor: 13.491

7.  Serial femtosecond crystallography of G protein-coupled receptors.

Authors:  Wei Liu; Daniel Wacker; Cornelius Gati; Gye Won Han; Daniel James; Dingjie Wang; Garrett Nelson; Uwe Weierstall; Vsevolod Katritch; Anton Barty; Nadia A Zatsepin; Dianfan Li; Marc Messerschmidt; Sébastien Boutet; Garth J Williams; Jason E Koglin; M Marvin Seibert; Chong Wang; Syed T A Shah; Shibom Basu; Raimund Fromme; Christopher Kupitz; Kimberley N Rendek; Ingo Grotjohann; Petra Fromme; Richard A Kirian; Kenneth R Beyerlein; Thomas A White; Henry N Chapman; Martin Caffrey; John C H Spence; Raymond C Stevens; Vadim Cherezov
Journal:  Science       Date:  2013-12-20       Impact factor: 47.728

8.  Chemically Stable Lipids for Membrane Protein Crystallization.

Authors:  Andrii Ishchenko; Lingling Peng; Egor Zinovev; Alexey Vlasov; Sung Chang Lee; Alexander Kuklin; Alexey Mishin; Valentin Borshchevskiy; Qinghai Zhang; Vadim Cherezov
Journal:  Cryst Growth Des       Date:  2017-05-12       Impact factor: 4.076

9.  Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography.

Authors:  Uwe Weierstall; Daniel James; Chong Wang; Thomas A White; Dingjie Wang; Wei Liu; John C H Spence; R Bruce Doak; Garrett Nelson; Petra Fromme; Raimund Fromme; Ingo Grotjohann; Christopher Kupitz; Nadia A Zatsepin; Haiguang Liu; Shibom Basu; Daniel Wacker; Gye Won Han; Vsevolod Katritch; Sébastien Boutet; Marc Messerschmidt; Garth J Williams; Jason E Koglin; M Marvin Seibert; Markus Klinker; Cornelius Gati; Robert L Shoeman; Anton Barty; Henry N Chapman; Richard A Kirian; Kenneth R Beyerlein; Raymond C Stevens; Dianfan Li; Syed T A Shah; Nicole Howe; Martin Caffrey; Vadim Cherezov
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919

Review 10.  Serial Femtosecond Crystallography of G Protein-Coupled Receptors.

Authors:  Benjamin Stauch; Vadim Cherezov
Journal:  Annu Rev Biophys       Date:  2018-03-15       Impact factor: 12.981

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