Literature DB >> 24260038

Using macromolecular-crystallography beamline and microfluidic platform for small-angle diffraction studies of lipidic matrices for membrane-protein crystallization.

E Kondrashkina1, D S Khvostichenko, S L Perry, J Von Osinski, P J A Kenis, K Brister.   

Abstract

Macromolecular-crystallography (MX) beamlines routinely provide a possibility to change X-ray beam energy, focus the beam to a size of tens of microns, align a sample on a microdiffractometer using on-axis video microscope, and collect data with an area-detector positioned in three dimensions. These capabilities allow for running complementary measurements of small-angle X-ray scattering and diffraction (SAXS) at the same beamline with such additions to the standard MX setup as a vacuum path between the sample and the detector, a modified beam stop, and a custom sample cell. On the 21-ID-D MX beamline at the Advanced Photon Source we attach a vacuum flight tube to the area detector support and use the support motion for aligning a beam stop built into the rear end of the flight tube. At 8 KeV energy and 1 m sample-to-detector distance we can achieve a small-angle resolution of 0.01A-1 in the reciprocal space. Measuring SAXS with this setup, we have studied phase diagrams of lipidic mesophases used as matrices for membrane-protein crystallization. The outcome of crystallization trials is significantly affected by the structure of the lipidic mesophases, which is determined by the composition of the crystallization mixture. We use a microfluidic chip for the mesophase formulation and in situ SAXS data collection. Using the MX beamline and the microfluidic platform we have demonstrated the viability of the high-throughput SAXS studies facilitating screening of lipidic matrices for membrane-protein crystallization.

Entities:  

Year:  2013        PMID: 24260038      PMCID: PMC3832202          DOI: 10.1088/1742-6596/425/1/012013

Source DB:  PubMed          Journal:  J Phys Conf Ser        ISSN: 1742-6588


  9 in total

1.  Protein structural dynamics in solution unveiled via 100-ps time-resolved x-ray scattering.

Authors:  Hyun Sun Cho; Naranbaatar Dashdorj; Friedrich Schotte; Timothy Graber; Robert Henning; Philip Anfinrud
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-06       Impact factor: 11.205

2.  Lipidic cubic phases: a novel concept for the crystallization of membrane proteins.

Authors:  E M Landau; J P Rosenbusch
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-10       Impact factor: 11.205

Review 3.  Diversity and modularity of G protein-coupled receptor structures.

Authors:  Vsevolod Katritch; Vadim Cherezov; Raymond C Stevens
Journal:  Trends Pharmacol Sci       Date:  2011-10-25       Impact factor: 14.819

4.  Characterization of lipid matrices for membrane protein crystallization by high-throughput small angle X-ray scattering.

Authors:  Jeremiah S Joseph; Wei Liu; Joshua Kunken; Thomas M Weiss; Hiro Tsuruta; Vadim Cherezov
Journal:  Methods       Date:  2011-08-27       Impact factor: 3.608

5.  Recent progress in the structure determination of GPCRs, a membrane protein family with high potential as pharmaceutical targets.

Authors:  Vadim Cherezov; Enrique Abola; Raymond C Stevens
Journal:  Methods Mol Biol       Date:  2010

6.  Microfluidic Generation of Lipidic Mesophases for Membrane Protein Crystallization.

Authors:  Sarah L Perry; Griffin W Roberts; Joshua D Tice; Robert B Gennis; Paul J A Kenis
Journal:  Cryst Growth Des       Date:  2009-06-03       Impact factor: 4.076

7.  Crystallizing membrane proteins using lipidic mesophases.

Authors:  Martin Caffrey; Vadim Cherezov
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

8.  SHADOW3: a new version of the synchrotron X-ray optics modelling package.

Authors:  Manuel Sanchez del Rio; Niccolo Canestrari; Fan Jiang; Franco Cerrina
Journal:  J Synchrotron Radiat       Date:  2011-07-20       Impact factor: 2.616

9.  Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS).

Authors:  Greg L Hura; Angeli L Menon; Michal Hammel; Robert P Rambo; Farris L Poole; Susan E Tsutakawa; Francis E Jenney; Scott Classen; Kenneth A Frankel; Robert C Hopkins; Sung-Jae Yang; Joseph W Scott; Bret D Dillard; Michael W W Adams; John A Tainer
Journal:  Nat Methods       Date:  2009-07-20       Impact factor: 28.547

  9 in total
  2 in total

1.  Graphene-based microfluidics for serial crystallography.

Authors:  Shuo Sui; Yuxi Wang; Kristopher W Kolewe; Vukica Srajer; Robert Henning; Jessica D Schiffman; Christos Dimitrakopoulos; Sarah L Perry
Journal:  Lab Chip       Date:  2016-08-02       Impact factor: 6.799

2.  Effects of detergent β-octylglucoside and phosphate salt solutions on phase behavior of monoolein mesophases.

Authors:  Daria S Khvostichenko; Johnathan J D Ng; Sarah L Perry; Monisha Menon; Paul J A Kenis
Journal:  Biophys J       Date:  2013-10-15       Impact factor: 4.033

  2 in total

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