Literature DB >> 21887535

Analysis of 12 X-STRs in Greenlanders, Danes and Somalis using Argus X-12.

Carmen Tomas1, Vânia Pereira, Niels Morling.   

Abstract

X-chromosome markers have become a useful set of markers of choice when certain complex kinship cases need to be unravelled. The Argus X-12 kit allows the co-amplification in a single PCR reaction of 12 X-chromosome short tandem repeats located in four linkage groups. A number of 507 unrelated individuals from Greenland, Denmark and Somalia together with two generation families were typed using the Argus X-12 kit. Silent alleles for the DXS10148 and DXS10146 systems were observed in males, mostly from Somalia. High levels of intrapopulation variability and therefore high forensic parameter values were calculated for the three studied populations. The population in Greenland showed a significantly lower intrapopulation variability and a high genetic differentiation compared with 13 other populations. Significant levels of linkage disequilibrium were observed between markers belonging to the same linkage group, mainly in the populations in Greenland and Somalia. Family studies allowed the calculation of mutation and recombination frequencies. A higher male versus female mutation rate was obtained, with an average value of 3.3 × 10(-3). Recombination fraction calculations performed on two generation families showed, as previously described, a not complete independence between X-chromosome linkage groups 3 and 4.

Mesh:

Year:  2011        PMID: 21887535     DOI: 10.1007/s00414-011-0609-y

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  33 in total

1.  mtDNA variation among Greenland Eskimos: the edge of the Beringian expansion.

Authors:  J Saillard; P Forster; N Lynnerup; H J Bandelt; S Nørby
Journal:  Am J Hum Genet       Date:  2000-08-02       Impact factor: 11.025

2.  Mutation of the repeat number of the HPRTB locus and structure of rare intermediate alleles.

Authors:  G Mertens; M Gielis; N Mommers; A Mularoni; J Lamartine; H Heylen; L Muylle; A Vandenberghe
Journal:  Int J Legal Med       Date:  1999       Impact factor: 2.686

3.  High level of male-biased Scandinavian admixture in Greenlandic Inuit shown by Y-chromosomal analysis.

Authors:  Elena Bosch; Francesc Calafell; Zoë H Rosser; Søren Nørby; Niels Lynnerup; Matthew E Hurles; Mark A Jobling
Journal:  Hum Genet       Date:  2003-02-20       Impact factor: 4.132

4.  Somatic mutations at STR loci--a reason for three-allele pattern and mosaicism.

Authors:  B Rolf; P Wiegand; B Brinkmann
Journal:  Forensic Sci Int       Date:  2002-05-23       Impact factor: 2.395

5.  Linkage and linkage disequilibrium analysis of X-STRs in Italian families.

Authors:  Serena Inturri; Silvia Menegon; Antonio Amoroso; Carlo Torre; Carlo Robino
Journal:  Forensic Sci Int Genet       Date:  2010-11-18       Impact factor: 4.882

6.  Analysis of linkage and linkage disequilibrium for eight X-STR markers.

Authors:  Andreas O Tillmar; Petter Mostad; Thore Egeland; Bertil Lindblom; Gunilla Holmlund; Kerstin Montelius
Journal:  Forensic Sci Int Genet       Date:  2008-10-26       Impact factor: 4.882

7.  Mutation rate in human microsatellites: influence of the structure and length of the tandem repeat.

Authors:  B Brinkmann; M Klintschar; F Neuhuber; J Hühne; B Rolf
Journal:  Am J Hum Genet       Date:  1998-06       Impact factor: 11.025

8.  Diversity of 15 human X chromosome microsatellite loci in Polish population.

Authors:  Sylwia Łuczak; Urszula Rogalla; Boris A Malyarchuk; Tomasz Grzybowski
Journal:  Forensic Sci Int Genet       Date:  2011-01-22       Impact factor: 4.882

9.  Hungarian population data of eight X-linked markers in four linkage groups.

Authors:  Andrea Zalán; Antónia Völgyi; Werner Brabetz; Dorit Schleinitz; Horolma Pamjav
Journal:  Forensic Sci Int       Date:  2007-06-22       Impact factor: 2.395

10.  Y-chromosome STR haplotypes in males from Greenland.

Authors:  Charlotte Hallenberg; Carmen Tomas; Bo Simonsen; Niels Morling
Journal:  Forensic Sci Int Genet       Date:  2009-01-14       Impact factor: 4.882

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  19 in total

1.  Population data of 12 X-STR loci in a North of Portugal sample.

Authors:  Laura Cainé; Sérgio Costa; Maria F Pinheiro
Journal:  Int J Legal Med       Date:  2013-01       Impact factor: 2.686

2.  Development and population study of the 12 X-STR loci multiplexes PCR systems.

Authors:  Qiu-Ling Liu; Hu Zhao; Jian-Ding Chen; Xiao-Guang Wang; De-Jian Lu; Li Quan
Journal:  Int J Legal Med       Date:  2012-02-16       Impact factor: 2.686

3.  Genetic study of 12 X-STRs in Malay population living in and around Kuala Lumpur using Investigator Argus X-12 kit.

Authors:  Michinaga Samejima; Yasutaka Nakamura; Phrabhakaran Nambiar; Kiyoshi Minaguchi
Journal:  Int J Legal Med       Date:  2012-05-15       Impact factor: 2.686

4.  Genetic analysis of 19 X chromosome STR loci for forensic purposes in four Chinese ethnic groups.

Authors:  Xingyi Yang; Xiaofang Zhang; Junyong Zhu; Linli Chen; Changhui Liu; Xingling Feng; Ling Chen; Huijun Wang; Chao Liu
Journal:  Sci Rep       Date:  2017-02-17       Impact factor: 4.379

5.  Analysis of 12 X-STR loci in the population of south Croatia.

Authors:  Gordan Mršić; Petar Ozretić; Josip Crnjac; Siniša Merkaš; Ivana Račić; Sara Rožić; Viktorija Sukser; Maja Popović; Marina Korolija
Journal:  Mol Biol Rep       Date:  2017-01-09       Impact factor: 2.316

6.  Curiosities of X chromosomal markers and haplotypes.

Authors:  Daniel Kling
Journal:  Int J Legal Med       Date:  2017-05-26       Impact factor: 2.686

7.  Population genetic analysis of Chinese Zhuang and Mulao minorities using AGCU-X19 STR kit.

Authors:  Cheng Xiao; Shuanglin Li; Xiaofang Zhang; Xingyi Yang; Chao Liu; Ling Chen
Journal:  Int J Legal Med       Date:  2019-01-23       Impact factor: 2.686

8.  Genetic analysis of 12 X-chromosome STRs in Western Mediterranean populations.

Authors:  J F Ferragut; K Bentayebi; J A Castro; C Ramon; A Picornell
Journal:  Int J Legal Med       Date:  2014-09-11       Impact factor: 2.686

9.  X-chromosome STR markers data in a Cabo Verde immigrant population of Lisboa.

Authors:  Heloísa Afonso Costa; Paulo Morais; Cláudia Vieira da Silva; Sara Matos; Rodolfo Marques Santos; Rosa Espinheira; Jorge Costa Santos; António Amorim
Journal:  Mol Biol Rep       Date:  2014-01-29       Impact factor: 2.316

10.  Mutation rates of 15 X chromosomal short tandem repeat markers.

Authors:  Toni M Diegoli; Adrian Linacre; Moses S Schanfield; Michael D Coble
Journal:  Int J Legal Med       Date:  2014-05-09       Impact factor: 2.686

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