Literature DB >> 24811886

Mutation rates of 15 X chromosomal short tandem repeat markers.

Toni M Diegoli1, Adrian Linacre, Moses S Schanfield, Michael D Coble.   

Abstract

Though allele frequency data for a variety of X chromosomal short tandem repeat (STR) markers in a range of populations have been reported, fewer studies of mutation rates in these same markers or populations are available. In order to address possible mismatches during kinship analysis due to mutation, a robust estimate of the rate of mutation must be established. Here, mutation rates in three US populations have been determined for a total of 15 markers (DXS6789, DXS9902, DXS7132, DXS7130, DXS6795, DXS10147, DXS8378, DXS7423, HPRTB, DXS101, DXS7424, GATA31E08, GATA172D05, GATA165B12, and DXS6803). Eighteen mutations over 20,625 meioses were observed, and the overall X STR mutation rate in this study was found to be 8.73 × 10(-4) (95 % CI, 5.2-13.8 × 10(-4)). A review of published mutation rate studies revealed similar findings in other global populations, and allowed the compilation of a combined dataset of 81,310 meioses which can be employed by the forensic community.

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Year:  2014        PMID: 24811886     DOI: 10.1007/s00414-014-1016-y

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  51 in total

1.  Validation of the STR DXS7424 and the linkage situation on the X-chromosome.

Authors:  Jeanett Edelmann; Sandra Hering; Eberhard Kuhlisch; Reinhard Szibor
Journal:  Forensic Sci Int       Date:  2002-02-18       Impact factor: 2.395

2.  Collaborative genetic mapping of 12 forensic short tandem repeat (STR) loci on the human X chromosome.

Authors:  Michael Nothnagel; Reinhard Szibor; Oliver Vollrath; Christa Augustin; Jeanett Edelmann; Maria Geppert; Cíntia Alves; Leonor Gusmão; Marielle Vennemann; Yiping Hou; Uta-Dorothee Immel; Serena Inturri; Haibo Luo; Sabine Lutz-Bonengel; Carlo Robino; Lutz Roewer; Burkhard Rolf; Juliane Sanft; Kyoung-Jin Shin; Jeong Eun Sim; Peter Wiegand; Christian Winkler; Michael Krawczak; Sandra Hering
Journal:  Forensic Sci Int Genet       Date:  2012-03-27       Impact factor: 4.882

3.  Development of a five ChX STRs loci typing system.

Authors:  Qiu-ling Liu; De-jian Lv; Xiang-lin Wu; Hong-yu Sun; Xin-yao Wu; Hui-ling Lu
Journal:  Int J Legal Med       Date:  2008-02-05       Impact factor: 2.686

4.  Development of pentaplex PCR and genetic analysis of X chromosomal STRs in Punjabi population of Pakistan.

Authors:  Asif Nadeem; Masroor Ellahi Babar; Manzoor Hussain; Mohammad A Tahir
Journal:  Mol Biol Rep       Date:  2008-10-21       Impact factor: 2.316

5.  Population genetic data for 15 X chromosomal short tandem repeat markers in three U.S. populations.

Authors:  Toni M Diegoli; Adrian Linacre; Michael D Coble
Journal:  Forensic Sci Int Genet       Date:  2013-09-07       Impact factor: 4.882

6.  Mutation rate in human microsatellites: influence of the structure and length of the tandem repeat.

Authors:  B Brinkmann; M Klintschar; F Neuhuber; J Hühne; B Rolf
Journal:  Am J Hum Genet       Date:  1998-06       Impact factor: 11.025

7.  Haplotype-assisted characterization of germline mutations at short tandem repeat loci.

Authors:  Miriam Müller; Ulla Sibbing; Carsten Hohoff; Bernd Brinkmann
Journal:  Int J Legal Med       Date:  2009-11-11       Impact factor: 2.686

8.  Germline mutations of STR-alleles include multi-step mutations as defined by sequencing of repeat and flanking regions.

Authors:  Eva-Maria Dauber; Adelgunde Kratzer; Franz Neuhuber; Walther Parson; Michael Klintschar; Walter Bär; Wolfgang R Mayr
Journal:  Forensic Sci Int Genet       Date:  2011-08-27       Impact factor: 4.882

9.  Mutation of human short tandem repeats.

Authors:  J L Weber; C Wong
Journal:  Hum Mol Genet       Date:  1993-08       Impact factor: 6.150

10.  Mutation rates at Y chromosome specific microsatellites.

Authors:  L Gusmão; P Sánchez-Diz; F Calafell; P Martín; C A Alonso; F Alvarez-Fernández; C Alves; L Borjas-Fajardo; W R Bozzo; M L Bravo; J J Builes; J Capilla; M Carvalho; C Castillo; C I Catanesi; D Corach; A M Di Lonardo; R Espinheira; E Fagundes de Carvalho; M J Farfán; H P Figueiredo; I Gomes; M M Lojo; M Marino; M F Pinheiro; M L Pontes; V Prieto; E Ramos-Luis; J A Riancho; A C Souza Góes; O A Santapa; D R Sumita; G Vallejo; L Vidal Rioja; M C Vide; C I Vieira da Silva; M R Whittle; W Zabala; M T Zarrabeitia; A Alonso; A Carracedo; A Amorim
Journal:  Hum Mutat       Date:  2005-12       Impact factor: 4.878

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  2 in total

1.  Genetic polymorphisms and mutation rates of 16 X-STRs in a Han Chinese population of Beijing and application examples in second-degree kinship cases.

Authors:  Man Chen; He Ren; Zhiyong Liu; Jing Zhao; Chong Chen; Yan Shi; Li Jia; Feng Cheng; Tong Chen; Qingwei Fan; Yaran Yang; Yacheng Liu; Gengqian Zhang; Jiangwei Yan
Journal:  Int J Legal Med       Date:  2019-04-01       Impact factor: 2.686

2.  Linkage, recombination and mutation rate analyses of 16 X-chromosomal STR loci in Sri Lankan Sinhalese pedigrees.

Authors:  Nandika Perera; Ruvini Wijithalal; Gayani Galhena; Gaya Ranawaka
Journal:  Int J Legal Med       Date:  2022-01-13       Impact factor: 2.686

  2 in total

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