Literature DB >> 21837263

ASSESSMENT OF SYNCHRONY IN MULTIPLE NEURAL SPIKE TRAINS USING LOGLINEAR POINT PROCESS MODELS.

Robert E Kass1, Ryan C Kelly, Wei-Liem Loh.   

Abstract

Neural spike trains, which are sequences of very brief jumps in voltage across the cell membrane, were one of the motivating applications for the development of point process methodology. Early work required the assumption of stationarity, but contemporary experiments often use time-varying stimuli and produce time-varying neural responses. More recently, many statistical methods have been developed for nonstationary neural point process data. There has also been much interest in identifying synchrony, meaning events across two or more neurons that are nearly simultaneous at the time scale of the recordings. A natural statistical approach is to discretize time, using short time bins, and to introduce loglinear models for dependency among neurons, but previous use of loglinear modeling technology has assumed stationarity. We introduce a succinct yet powerful class of time-varying loglinear models by (a) allowing individual-neuron effects (main effects) to involve time-varying intensities; (b) also allowing the individual-neuron effects to involve autocovariation effects (history effects) due to past spiking, (c) assuming excess synchrony effects (interaction effects) do not depend on history, and (d) assuming all effects vary smoothly across time. Using data from primary visual cortex of an anesthetized monkey we give two examples in which the rate of synchronous spiking can not be explained by stimulus-related changes in individual-neuron effects. In one example, the excess synchrony disappears when slow-wave "up" states are taken into account as history effects, while in the second example it does not. Standard point process theory explicitly rules out synchronous events. To justify our use of continuous-time methodology we introduce a framework that incorporates synchronous events and provides continuous-time loglinear point process approximations to discrete-time loglinear models.

Entities:  

Year:  2011        PMID: 21837263      PMCID: PMC3152213          DOI: 10.1214/10-AOAS429

Source DB:  PubMed          Journal:  Ann Appl Stat        ISSN: 1932-6157            Impact factor:   2.083


  12 in total

1.  Neural coding: higher-order temporal patterns in the neurostatistics of cell assemblies.

Authors:  L Martignon; G Deco; K Laskey; M Diamond; W Freiwald; E Vaadia
Journal:  Neural Comput       Date:  2000-11       Impact factor: 2.026

2.  The time-rescaling theorem and its application to neural spike train data analysis.

Authors:  Emery N Brown; Riccardo Barbieri; Valérie Ventura; Robert E Kass; Loren M Frank
Journal:  Neural Comput       Date:  2002-02       Impact factor: 2.026

3.  Unitary events in multiple single-neuron spiking activity: I. Detection and significance.

Authors:  Sonja Grün; Markus Diesmann; Ad Aertsen
Journal:  Neural Comput       Date:  2002-01       Impact factor: 2.026

4.  Unitary events in multiple single-neuron spiking activity: II. Nonstationary data.

Authors:  Sonja Grün; Markus Diesmann; Ad Aertsen
Journal:  Neural Comput       Date:  2002-01       Impact factor: 2.026

5.  Statistical assessment of time-varying dependency between two neurons.

Authors:  Valérie Ventura; Can Cai; Robert E Kass
Journal:  J Neurophysiol       Date:  2005-10       Impact factor: 2.714

6.  Weak pairwise correlations imply strongly correlated network states in a neural population.

Authors:  Elad Schneidman; Michael J Berry; Ronen Segev; William Bialek
Journal:  Nature       Date:  2006-04-09       Impact factor: 49.962

7.  Comparison of recordings from microelectrode arrays and single electrodes in the visual cortex.

Authors:  Ryan C Kelly; Matthew A Smith; Jason M Samonds; Adam Kohn; A B Bonds; J Anthony Movshon; Tai Sing Lee
Journal:  J Neurosci       Date:  2007-01-10       Impact factor: 6.167

8.  Traditional waveform based spike sorting yields biased rate code estimates.

Authors:  Valérie Ventura
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-16       Impact factor: 11.205

Review 9.  Data-driven significance estimation for precise spike correlation.

Authors:  Sonja Grün
Journal:  J Neurophysiol       Date:  2009-01-07       Impact factor: 2.714

10.  Local field potentials indicate network state and account for neuronal response variability.

Authors:  Ryan C Kelly; Matthew A Smith; Robert E Kass; Tai Sing Lee
Journal:  J Comput Neurosci       Date:  2010-01-22       Impact factor: 1.621

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  15 in total

1.  An L₁-regularized logistic model for detecting short-term neuronal interactions.

Authors:  Mengyuan Zhao; Aaron Batista; John P Cunningham; Cynthia Chestek; Zuley Rivera-Alvidrez; Rachel Kalmar; Stephen Ryu; Krishna Shenoy; Satish Iyengar
Journal:  J Comput Neurosci       Date:  2011-10-22       Impact factor: 1.621

2.  Copula regression analysis of simultaneously recorded frontal eye field and inferotemporal spiking activity during object-based working memory.

Authors:  Meng Hu; Kelsey L Clark; Xiajing Gong; Behrad Noudoost; Mingyao Li; Tirin Moore; Hualou Liang
Journal:  J Neurosci       Date:  2015-06-10       Impact factor: 6.167

3.  A semiparametric Bayesian model for detecting synchrony among multiple neurons.

Authors:  Babak Shahbaba; Bo Zhou; Shiwei Lan; Hernando Ombao; David Moorman; Sam Behseta
Journal:  Neural Comput       Date:  2014-06-12       Impact factor: 2.026

Review 4.  From point process observations to collective neural dynamics: Nonlinear Hawkes process GLMs, low-dimensional dynamics and coarse graining.

Authors:  Wilson Truccolo
Journal:  J Physiol Paris       Date:  2017-05-25

5.  A framework for evaluating pairwise and multiway synchrony among stimulus-driven neurons.

Authors:  Ryan C Kelly; Robert E Kass
Journal:  Neural Comput       Date:  2012-04-17       Impact factor: 2.026

6.  Spatiotemporal conditional inference and hypothesis tests for neural ensemble spiking precision.

Authors:  Matthew T Harrison; Asohan Amarasingham; Wilson Truccolo
Journal:  Neural Comput       Date:  2015-01       Impact factor: 2.026

7.  False discovery rate regression: an application to neural synchrony detection in primary visual cortex.

Authors:  James G Scott; Ryan C Kelly; Matthew A Smith; Pengcheng Zhou; Robert E Kass
Journal:  J Am Stat Assoc       Date:  2015       Impact factor: 5.033

8.  State-space analysis of time-varying higher-order spike correlation for multiple neural spike train data.

Authors:  Hideaki Shimazaki; Shun-Ichi Amari; Emery N Brown; Sonja Grün
Journal:  PLoS Comput Biol       Date:  2012-03-08       Impact factor: 4.475

9.  A Dynamic Bayesian Model for Characterizing Cross-Neuronal Interactions During Decision-Making.

Authors:  Bo Zhou; David E Moorman; Sam Behseta; Hernando Ombao; Babak Shahbaba
Journal:  J Am Stat Assoc       Date:  2016-08-18       Impact factor: 5.033

10.  Detecting multineuronal temporal patterns in parallel spike trains.

Authors:  Kai S Gansel; Wolf Singer
Journal:  Front Neuroinform       Date:  2012-05-22       Impact factor: 4.081

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