Literature DB >> 22509967

A framework for evaluating pairwise and multiway synchrony among stimulus-driven neurons.

Ryan C Kelly1, Robert E Kass.   

Abstract

Several authors have previously discussed the use of log-linear models, often called maximum entropy models, for analyzing spike train data to detect synchrony. The usual log-linear modeling techniques, however, do not allow time-varying firing rates that typically appear in stimulus-driven (or action-driven) neurons, nor do they incorporate non-Poisson history effects or covariate effects. We generalize the usual approach, combining point-process regression models of individual neuron activity with log-linear models of multiway synchronous interaction. The methods are illustrated with results found in spike trains recorded simultaneously from primary visual cortex. We then assess the amount of data needed to reliably detect multiway spiking.

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Year:  2012        PMID: 22509967      PMCID: PMC3374919          DOI: 10.1162/NECO_a_00307

Source DB:  PubMed          Journal:  Neural Comput        ISSN: 0899-7667            Impact factor:   2.026


  29 in total

1.  Model dependence in quantification of spike interdependence by joint peri-stimulus time histogram.

Authors:  H Ito; S Tsuji
Journal:  Neural Comput       Date:  2000-01       Impact factor: 2.026

2.  Accounting for network effects in neuronal responses using L1 regularized point process models.

Authors:  Ryan C Kelly; Robert E Kass; Matthew A Smith; Tai Sing Lee
Journal:  Adv Neural Inf Process Syst       Date:  2010

3.  A point process framework for relating neural spiking activity to spiking history, neural ensemble, and extrinsic covariate effects.

Authors:  Wilson Truccolo; Uri T Eden; Matthew R Fellows; John P Donoghue; Emery N Brown
Journal:  J Neurophysiol       Date:  2004-09-08       Impact factor: 2.714

4.  Analyzing functional connectivity using a network likelihood model of ensemble neural spiking activity.

Authors:  Murat Okatan; Matthew A Wilson; Emery N Brown
Journal:  Neural Comput       Date:  2005-09       Impact factor: 2.026

5.  Weak pairwise correlations imply strongly correlated network states in a neural population.

Authors:  Elad Schneidman; Michael J Berry; Ronen Segev; William Bialek
Journal:  Nature       Date:  2006-04-09       Impact factor: 49.962

6.  Comparison of recordings from microelectrode arrays and single electrodes in the visual cortex.

Authors:  Ryan C Kelly; Matthew A Smith; Jason M Samonds; Adam Kohn; A B Bonds; J Anthony Movshon; Tai Sing Lee
Journal:  J Neurosci       Date:  2007-01-10       Impact factor: 6.167

7.  Dynamics of neuronal firing correlation: modulation of "effective connectivity".

Authors:  A M Aertsen; G L Gerstein; M K Habib; G Palm
Journal:  J Neurophysiol       Date:  1989-05       Impact factor: 2.714

8.  Neural synchrony in cortical networks: history, concept and current status.

Authors:  Peter J Uhlhaas; Gordon Pipa; Bruss Lima; Lucia Melloni; Sergio Neuenschwander; Danko Nikolić; Wolf Singer
Journal:  Front Integr Neurosci       Date:  2009-07-30

9.  Discrete- and continuous-time probabilistic models and algorithms for inferring neuronal UP and DOWN states.

Authors:  Zhe Chen; Sujith Vijayan; Riccardo Barbieri; Matthew A Wilson; Emery N Brown
Journal:  Neural Comput       Date:  2009-07       Impact factor: 2.026

10.  Spatio-temporal correlations and visual signalling in a complete neuronal population.

Authors:  Jonathan W Pillow; Jonathon Shlens; Liam Paninski; Alexander Sher; Alan M Litke; E J Chichilnisky; Eero P Simoncelli
Journal:  Nature       Date:  2008-07-23       Impact factor: 49.962

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  10 in total

1.  Copula regression analysis of simultaneously recorded frontal eye field and inferotemporal spiking activity during object-based working memory.

Authors:  Meng Hu; Kelsey L Clark; Xiajing Gong; Behrad Noudoost; Mingyao Li; Tirin Moore; Hualou Liang
Journal:  J Neurosci       Date:  2015-06-10       Impact factor: 6.167

2.  Adjusted regularization of cortical covariance.

Authors:  Giuseppe Vinci; Valérie Ventura; Matthew A Smith; Robert E Kass
Journal:  J Comput Neurosci       Date:  2018-09-06       Impact factor: 1.621

3.  A semiparametric Bayesian model for detecting synchrony among multiple neurons.

Authors:  Babak Shahbaba; Bo Zhou; Shiwei Lan; Hernando Ombao; David Moorman; Sam Behseta
Journal:  Neural Comput       Date:  2014-06-12       Impact factor: 2.026

4.  Spatiotemporal conditional inference and hypothesis tests for neural ensemble spiking precision.

Authors:  Matthew T Harrison; Asohan Amarasingham; Wilson Truccolo
Journal:  Neural Comput       Date:  2015-01       Impact factor: 2.026

5.  False discovery rate regression: an application to neural synchrony detection in primary visual cortex.

Authors:  James G Scott; Ryan C Kelly; Matthew A Smith; Pengcheng Zhou; Robert E Kass
Journal:  J Am Stat Assoc       Date:  2015       Impact factor: 5.033

6.  A Dynamic Bayesian Model for Characterizing Cross-Neuronal Interactions During Decision-Making.

Authors:  Bo Zhou; David E Moorman; Sam Behseta; Hernando Ombao; Babak Shahbaba
Journal:  J Am Stat Assoc       Date:  2016-08-18       Impact factor: 5.033

7.  Separating Spike Count Correlation from Firing Rate Correlation.

Authors:  Giuseppe Vinci; Valérie Ventura; Matthew A Smith; Robert E Kass
Journal:  Neural Comput       Date:  2016-03-04       Impact factor: 2.026

8.  Establishing a Statistical Link between Network Oscillations and Neural Synchrony.

Authors:  Pengcheng Zhou; Shawn D Burton; Adam C Snyder; Matthew A Smith; Nathaniel N Urban; Robert E Kass
Journal:  PLoS Comput Biol       Date:  2015-10-14       Impact factor: 4.475

Review 9.  Generative models for network neuroscience: prospects and promise.

Authors:  Richard F Betzel; Danielle S Bassett
Journal:  J R Soc Interface       Date:  2017-11-29       Impact factor: 4.118

10.  Methods for identification of spike patterns in massively parallel spike trains.

Authors:  Pietro Quaglio; Vahid Rostami; Emiliano Torre; Sonja Grün
Journal:  Biol Cybern       Date:  2018-04-12       Impact factor: 2.086

  10 in total

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