Literature DB >> 16160097

Statistical assessment of time-varying dependency between two neurons.

Valérie Ventura1, Can Cai, Robert E Kass.   

Abstract

The joint peristimulus time histogram (JPSTH) provides a visual representation of the dynamics of correlated activity for a pair of neurons. There are many ways to adjust the JPSTH for the time-varying firing-rate modulation of each neuron, and then to define a suitable measure of time-varying correlated activity. Our approach is to introduce a statistical model for the time-varying joint spiking activity so that the joint firing rate can be estimated more efficiently. We have applied an adaptive smoothing method, which has been shown to be effective in capturing sudden changes in firing rate, to the ratio of joint firing probability to the probability of firing predicted by independence. A bootstrap procedure, applicable to both Poisson and non-Poisson data, was used to define a statistical significance test of whether a large ratio could be attributable to chance alone. A numerical simulation showed that the bootstrap-based significance test has very nearly the correct rejection probability, and can have markedly better power to detect departures from independence than does an approach based on testing contiguous bins in the JPSTH. In a companion paper, we show how this formulation can accommodate latency and time-varying excitability effects, which can confound spike timing effects.

Mesh:

Year:  2005        PMID: 16160097     DOI: 10.1152/jn.00645.2004

Source DB:  PubMed          Journal:  J Neurophysiol        ISSN: 0022-3077            Impact factor:   2.714


  20 in total

Review 1.  Conditional modeling and the jitter method of spike resampling.

Authors:  Asohan Amarasingham; Matthew T Harrison; Nicholas G Hatsopoulos; Stuart Geman
Journal:  J Neurophysiol       Date:  2011-10-26       Impact factor: 2.714

2.  Widespread spatial integration in primary somatosensory cortex.

Authors:  Jamie L Reed; Pierre Pouget; Hui-Xin Qi; Zhiyi Zhou; Melanie R Bernard; Mark J Burish; John Haitas; A B Bonds; Jon H Kaas
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-15       Impact factor: 11.205

Review 3.  Data-driven significance estimation for precise spike correlation.

Authors:  Sonja Grün
Journal:  J Neurophysiol       Date:  2009-01-07       Impact factor: 2.714

4.  A rate and history-preserving resampling algorithm for neural spike trains.

Authors:  Matthew T Harrison; Stuart Geman
Journal:  Neural Comput       Date:  2009-05       Impact factor: 2.026

5.  Testing a neural coding hypothesis using surrogate data.

Authors:  Yoshito Hirata; Yuichi Katori; Hidetoshi Shimokawa; Hideyuki Suzuki; Timothy A Blenkinsop; Eric J Lang; Kazuyuki Aihara
Journal:  J Neurosci Methods       Date:  2008-05-15       Impact factor: 2.390

6.  Hierarchical Bayesian modeling and Markov chain Monte Carlo sampling for tuning-curve analysis.

Authors:  Beau Cronin; Ian H Stevenson; Mriganka Sur; Konrad P Körding
Journal:  J Neurophysiol       Date:  2009-11-04       Impact factor: 2.714

7.  ASSESSMENT OF SYNCHRONY IN MULTIPLE NEURAL SPIKE TRAINS USING LOGLINEAR POINT PROCESS MODELS.

Authors:  Robert E Kass; Ryan C Kelly; Wei-Liem Loh
Journal:  Ann Appl Stat       Date:  2011-06-01       Impact factor: 2.083

8.  A semiparametric Bayesian model for detecting synchrony among multiple neurons.

Authors:  Babak Shahbaba; Bo Zhou; Shiwei Lan; Hernando Ombao; David Moorman; Sam Behseta
Journal:  Neural Comput       Date:  2014-06-12       Impact factor: 2.026

9.  Cooperative and competitive interactions facilitate stereo computations in macaque primary visual cortex.

Authors:  Jason M Samonds; Brian R Potetz; Tai Sing Lee
Journal:  J Neurosci       Date:  2009-12-16       Impact factor: 6.167

10.  Surrogate spike train generation through dithering in operational time.

Authors:  Sebastien Louis; George L Gerstein; Sonja Grün; Markus Diesmann
Journal:  Front Comput Neurosci       Date:  2010-09-22       Impact factor: 2.380

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