Literature DB >> 19129298

Data-driven significance estimation for precise spike correlation.

Sonja Grün1.   

Abstract

The mechanisms underlying neuronal coding and, in particular, the role of temporal spike coordination are hotly debated. However, this debate is often confounded by an implicit discussion about the use of appropriate analysis methods. To avoid incorrect interpretation of data, the analysis of simultaneous spike trains for precise spike correlation needs to be properly adjusted to the features of the experimental spike trains. In particular, nonstationarity of the firing of individual neurons in time or across trials, a spike train structure deviating from Poisson, or a co-occurrence of such features in parallel spike trains are potent generators of false positives. Problems can be avoided by including these features in the null hypothesis of the significance test. In this context, the use of surrogate data becomes increasingly important, because the complexity of the data typically prevents analytical solutions. This review provides an overview of the potential obstacles in the correlation analysis of parallel spike data and possible routes to overcome them. The discussion is illustrated at every stage of the argument by referring to a specific analysis tool (the Unitary Events method). The conclusions, however, are of a general nature and hold for other analysis techniques. Thorough testing and calibration of analysis tools and the impact of potentially erroneous preprocessing stages are emphasized.

Mesh:

Year:  2009        PMID: 19129298      PMCID: PMC2666402          DOI: 10.1152/jn.00093.2008

Source DB:  PubMed          Journal:  J Neurophysiol        ISSN: 0022-3077            Impact factor:   2.714


  91 in total

1.  Precise spike synchronization in monkey motor cortex involved in preparation for movement.

Authors:  F Grammont; A Riehle
Journal:  Exp Brain Res       Date:  1999-09       Impact factor: 1.972

2.  The time-rescaling theorem and its application to neural spike train data analysis.

Authors:  Emery N Brown; Riccardo Barbieri; Valérie Ventura; Robert E Kass; Loren M Frank
Journal:  Neural Comput       Date:  2002-02       Impact factor: 2.026

3.  Rate limitations of unitary event analysis.

Authors:  A Roy; P N Steinmetz; E Niebur
Journal:  Neural Comput       Date:  2000-09       Impact factor: 2.026

4.  Elimination of response latency variability in neuronal spike trains.

Authors:  Martin P Nawrot; Ad Aertsen; Stefan Rotter
Journal:  Biol Cybern       Date:  2003-05       Impact factor: 2.086

Review 5.  Multiple neural spike train data analysis: state-of-the-art and future challenges.

Authors:  Emery N Brown; Robert E Kass; Partha P Mitra
Journal:  Nat Neurosci       Date:  2004-05       Impact factor: 24.884

6.  Weak pairwise correlations imply strongly correlated network states in a neural population.

Authors:  Elad Schneidman; Michael J Berry; Ronen Segev; William Bialek
Journal:  Nature       Date:  2006-04-09       Impact factor: 49.962

7.  The structure of multi-neuron firing patterns in primate retina.

Authors:  Jonathon Shlens; Greg D Field; Jeffrey L Gauthier; Matthew I Grivich; Dumitru Petrusca; Alexander Sher; Alan M Litke; E J Chichilnisky
Journal:  J Neurosci       Date:  2006-08-09       Impact factor: 6.167

8.  Measurement of variability dynamics in cortical spike trains.

Authors:  Martin P Nawrot; Clemens Boucsein; Victor Rodriguez Molina; Alexa Riehle; Ad Aertsen; Stefan Rotter
Journal:  J Neurosci Methods       Date:  2007-10-30       Impact factor: 2.390

9.  Point process models of single-neuron discharges.

Authors:  D H Johnson
Journal:  J Comput Neurosci       Date:  1996-12       Impact factor: 1.621

10.  Favored patterns in spike trains. I. Detection.

Authors:  J E Dayhoff; G L Gerstein
Journal:  J Neurophysiol       Date:  1983-06       Impact factor: 2.714

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  50 in total

Review 1.  Conditional modeling and the jitter method of spike resampling.

Authors:  Asohan Amarasingham; Matthew T Harrison; Nicholas G Hatsopoulos; Stuart Geman
Journal:  J Neurophysiol       Date:  2011-10-26       Impact factor: 2.714

2.  Accurately estimating neuronal correlation requires a new spike-sorting paradigm.

Authors:  Valérie Ventura; Richard C Gerkin
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-23       Impact factor: 11.205

3.  ASSESSMENT OF SYNCHRONY IN MULTIPLE NEURAL SPIKE TRAINS USING LOGLINEAR POINT PROCESS MODELS.

Authors:  Robert E Kass; Ryan C Kelly; Wei-Liem Loh
Journal:  Ann Appl Stat       Date:  2011-06-01       Impact factor: 2.083

4.  Bootstrap testing for cross-correlation under low firing activity.

Authors:  Aldana M González-Montoro; Ricardo Cao; Nelson Espinosa; Javier Cudeiro; Jorge Mariño
Journal:  J Comput Neurosci       Date:  2015-04-14       Impact factor: 1.621

5.  Ambiguity and nonidentifiability in the statistical analysis of neural codes.

Authors:  Asohan Amarasingham; Stuart Geman; Matthew T Harrison
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-01       Impact factor: 11.205

6.  SPIKY: a graphical user interface for monitoring spike train synchrony.

Authors:  Thomas Kreuz; Mario Mulansky; Nebojsa Bozanic
Journal:  J Neurophysiol       Date:  2015-03-04       Impact factor: 2.714

7.  Estimating the contribution of assembly activity to cortical dynamics from spike and population measures.

Authors:  Michael Denker; Alexa Riehle; Markus Diesmann; Sonja Grün
Journal:  J Comput Neurosci       Date:  2010-05-18       Impact factor: 1.621

8.  Repertoire of mesoscopic cortical activity is not reduced during anesthesia.

Authors:  Anthony G Hudetz; Jeannette A Vizuete; Siveshigan Pillay; George A Mashour
Journal:  Neuroscience       Date:  2016-10-14       Impact factor: 3.590

9.  Surrogate spike train generation through dithering in operational time.

Authors:  Sebastien Louis; George L Gerstein; Sonja Grün; Markus Diesmann
Journal:  Front Comput Neurosci       Date:  2010-09-22       Impact factor: 2.380

10.  Efficient identification of assembly neurons within massively parallel spike trains.

Authors:  Denise Berger; Christian Borgelt; Sebastien Louis; Abigail Morrison; Sonja Grün
Journal:  Comput Intell Neurosci       Date:  2009-09-29
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