Literature DB >> 20158253

Identification of hydroxyl protons, determination of their exchange dynamics, and characterization of hydrogen bonding in a microcrystallin protein.

Vipin Agarwal1, Rasmus Linser, Uwe Fink, Katja Faelber, Bernd Reif.   

Abstract

Heteronuclear correlation experiments employing perdeuterated proteins enable the observation of all hydroxyl protons in a microcrystalline protein by MAS solid-state NMR. Dipolar-based sequences allow magnetization transfers that are >50 times faster compared to scalar-coupling-based sequences, which significantly facilitates their assignment. Hydroxyl exchange rates were measured using EXSY-type experiments. We find a biexponential decay behavior for those hydroxyl groups that are involved in side chain-side chain C-O-H...O horizontal lineC hydrogen bonds. The quantification of the distances between the hydroxyl proton and the carbon atoms in the hydrogen-bonding donor as well as acceptor group is achieved via a REDOR experiment. In combination with X-ray data and isotropic proton chemical shifts, availability of (1)H,(13)C distance information can aid in the quantitative description of the geometry of these hydrogen bonds. Similarly, correlations between backbone amide proton and carbonyl atoms are observed, which will be useful in the analysis of the registry of beta-strand arrangement in amyloid fibrils.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20158253     DOI: 10.1021/ja910167q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  12 in total

1.  Assignment strategies for aliphatic protons in the solid-state in randomly protonated proteins.

Authors:  Sam Asami; Bernd Reif
Journal:  J Biomol NMR       Date:  2011-12-04       Impact factor: 2.835

2.  Backbone assignment of perdeuterated proteins using long-range H/C-dipolar transfers.

Authors:  Rasmus Linser
Journal:  J Biomol NMR       Date:  2011-12-14       Impact factor: 2.835

3.  Side-chain to backbone correlations from solid-state NMR of perdeuterated proteins through combined excitation and long-range magnetization transfers.

Authors:  Rasmus Linser
Journal:  J Biomol NMR       Date:  2011-08-07       Impact factor: 2.835

4.  Solid state NMR of proteins at high MAS frequencies: symmetry-based mixing and simultaneous acquisition of chemical shift correlation spectra.

Authors:  Peter Bellstedt; Christian Herbst; Sabine Häfner; Jörg Leppert; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2012-11-23       Impact factor: 2.835

5.  Hydration and Dynamics of Full-Length Tau Amyloid Fibrils Investigated by Solid-State Nuclear Magnetic Resonance.

Authors:  Aurelio J Dregni; Pu Duan; Mei Hong
Journal:  Biochemistry       Date:  2020-06-05       Impact factor: 3.162

6.  Quantification of protein backbone hydrogen-deuterium exchange rates by solid state NMR spectroscopy.

Authors:  Juan-Miguel Lopez del Amo; Uwe Fink; Bernd Reif
Journal:  J Biomol NMR       Date:  2010-10-20       Impact factor: 2.835

7.  Non-equilibrium hydrogen exchange for determination of H-bond strength and water accessibility in solid proteins.

Authors:  Kristof Grohe; Kumar Tekwani Movellan; Suresh Kumar Vasa; Karin Giller; Stefan Becker; Rasmus Linser
Journal:  J Biomol NMR       Date:  2017-04-09       Impact factor: 2.835

8.  Detection and characterization of serine and threonine hydroxyl protons in Bacillus circulans xylanase by NMR spectroscopy.

Authors:  Jacob A Brockerman; Mark Okon; Lawrence P McIntosh
Journal:  J Biomol NMR       Date:  2013-12-05       Impact factor: 2.835

9.  Side Chain Hydrogen-Bonding Interactions within Amyloid-like Fibrils Formed by the Low-Complexity Domain of FUS: Evidence from Solid State Nuclear Magnetic Resonance Spectroscopy.

Authors:  Dylan T Murray; Robert Tycko
Journal:  Biochemistry       Date:  2020-01-10       Impact factor: 3.162

10.  Mapping the Binding Interface of PET Tracer Molecules and Alzheimer Disease Aβ Fibrils by Using MAS Solid-State NMR Spectroscopy.

Authors:  Zheng Niu; Riddhiman Sarkar; Michaela Aichler; Hans-Jürgen Wester; Behrooz Hooshyar Yousefi; Bernd Reif
Journal:  Chembiochem       Date:  2020-05-19       Impact factor: 3.164

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.