Literature DB >> 21818549

¹H, ¹³C and ¹⁵N chemical shift assignments for the human Pitx2 homeodomain in complex with a 22-base hairpin DNA.

Thomas Doerdelmann1, Douglas J Kojetin, Jamie M Baird-Titus, Mark Rance.   

Abstract

As one of the most important eukaryotic DNA-binding motifs, the homeodomain has been identified in over one thousand proteins. Transcription factors containing homeodomains play critical roles in diverse biological processes and are often implicated in human genetic disorders. The human Pitx2 protein is a central downstream transcription factor in both the TGF-β and Wnt/β-catenin signaling pathways, and involved in the regulation of cell differentiation, cell pattern formation and tissue maintenance. To better understand how Pitx2 regulates its target genes, we are investigating the mechanisms that confer DNA-binding specificity on its homeodomain. Here, we report complete (1)H, (13)C and (15)N protein chemical shift assignments of the human Pitx2 homeodomain in complex with a non-consensus DNA sequence.

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Year:  2011        PMID: 21818549      PMCID: PMC3264750          DOI: 10.1007/s12104-011-9329-y

Source DB:  PubMed          Journal:  Biomol NMR Assign        ISSN: 1874-270X            Impact factor:   0.746


  9 in total

1.  Target selectivity of bicoid is dependent on nonconsensus site recognition and protein-protein interaction.

Authors:  C Zhao; V Dave; F Yang; T Scarborough; J Ma
Journal:  Mol Cell Biol       Date:  2000-11       Impact factor: 4.272

2.  The Homeodomain Resource: 2003 update.

Authors:  Sharmila Banerjee-Basu; Travis Moreland; Benjamin J Hsu; Kenneth L Trout; Andreas D Baxevanis
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

3.  Using NMRView to visualize and analyze the NMR spectra of macromolecules.

Authors:  Bruce A Johnson
Journal:  Methods Mol Biol       Date:  2004

4.  1H, 13C and 15N chemical shift assignments for the human Pitx2 homeodomain and a R24H homeodomain mutant.

Authors:  Thomas Doerdelmann; Douglas J Kojetin; Jamie M Baird-Titus; Mark Rance
Journal:  Biomol NMR Assign       Date:  2010-11-04       Impact factor: 0.746

5.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

6.  The solution structure of the native K50 Bicoid homeodomain bound to the consensus TAATCC DNA-binding site.

Authors:  Jamie M Baird-Titus; Kimber Clark-Baldwin; Vrushank Dave; Carol A Caperelli; Jun Ma; Mark Rance
Journal:  J Mol Biol       Date:  2005-12-22       Impact factor: 5.469

7.  Solution structure of the K50 class homeodomain PITX2 bound to DNA and implications for mutations that cause Rieger syndrome.

Authors:  Beth A Chaney; Kimber Clark-Baldwin; Vrushank Dave; Jun Ma; Mark Rance
Journal:  Biochemistry       Date:  2005-05-24       Impact factor: 3.162

Review 8.  Regulation of segmentation and segmental identity by Drosophila homeoproteins: the role of DNA binding in functional activity and specificity.

Authors:  M D Biggin; W McGinnis
Journal:  Development       Date:  1997-11       Impact factor: 6.868

9.  1H, 13C and 15N chemical shift referencing in biomolecular NMR.

Authors:  D S Wishart; C G Bigam; J Yao; F Abildgaard; H J Dyson; E Oldfield; J L Markley; B D Sykes
Journal:  J Biomol NMR       Date:  1995-09       Impact factor: 2.835

  9 in total

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