Literature DB >> 12520008

The Homeodomain Resource: 2003 update.

Sharmila Banerjee-Basu1, Travis Moreland, Benjamin J Hsu, Kenneth L Trout, Andreas D Baxevanis.   

Abstract

The Homeodomain Resource is a searchable, curated collection of information for the homeodomain protein family. The resource is organized in a compact form and provides user-friendly interfaces for both querying the component databases and assembling customized datasets. The current release (version 5.0, October 2002) contains 1056 full-length homeodomain-containing sequences, 37 experimentally-derived structures, 81 homeodomain interactions, 84 homeodomain DNA-binding sites and 114 homeodomain proteins implicated in human genetic disorders. A new feature of this new release is the inclusion of experimentally-derived protein-protein interaction data for homeodomain family members. All entries are cross-linked for easy retrieval of the original records from source databases. The Homeodomain Resource is freely available through the World Wide Web at http://research.nhgri.nih.gov/homeodomain/.

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Year:  2003        PMID: 12520008      PMCID: PMC165565          DOI: 10.1093/nar/gkg118

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  7 in total

1.  The Homeodomain Resource: sequences, structures, DNA binding sites and genomic information.

Authors:  S Banerjee-Basu; D W Sink; A D Baxevanis
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  Crystal structure of an engrailed homeodomain-DNA complex at 2.8 A resolution: a framework for understanding homeodomain-DNA interactions.

Authors:  C R Kissinger; B S Liu; E Martin-Blanco; T B Kornberg; C O Pabo
Journal:  Cell       Date:  1990-11-02       Impact factor: 41.582

3.  Crystal structure of a MAT alpha 2 homeodomain-operator complex suggests a general model for homeodomain-DNA interactions.

Authors:  C Wolberger; A K Vershon; B Liu; A D Johnson; C O Pabo
Journal:  Cell       Date:  1991-11-01       Impact factor: 41.582

Review 4.  Homeodomain proteins.

Authors:  W J Gehring; M Affolter; T Bürglin
Journal:  Annu Rev Biochem       Date:  1994       Impact factor: 23.643

5.  The X-ray structure of an atypical homeodomain present in the rat liver transcription factor LFB1/HNF1 and implications for DNA binding.

Authors:  T A Ceska; M Lamers; P Monaci; A Nicosia; R Cortese; D Suck
Journal:  EMBO J       Date:  1993-05       Impact factor: 11.598

6.  Solution structure of the POU-specific DNA-binding domain of Oct-1.

Authors:  N Dekker; M Cox; R Boelens; C P Verrijzer; P C van der Vliet; R Kaptein
Journal:  Nature       Date:  1993-04-29       Impact factor: 49.962

7.  Structure of the rat thyroid transcription factor-1 (TTF-1) gene.

Authors:  T Endo; K Ohta; T Saito; K Haraguchi; M Nakazato; T Kogai; T Onaya
Journal:  Biochem Biophys Res Commun       Date:  1994-11-15       Impact factor: 3.575

  7 in total
  11 in total

1.  A phage display selection of engrailed homeodomain mutants and the importance of residue Q50.

Authors:  Matthew D Simon; Ken Sato; Gregory A Weiss; Kevan M Shokat
Journal:  Nucleic Acids Res       Date:  2004-07-09       Impact factor: 16.971

2.  ¹H, ¹³C and ¹⁵N chemical shift assignments for the human Pitx2 homeodomain in complex with a 22-base hairpin DNA.

Authors:  Thomas Doerdelmann; Douglas J Kojetin; Jamie M Baird-Titus; Mark Rance
Journal:  Biomol NMR Assign       Date:  2011-08-05       Impact factor: 0.746

3.  Role of conserved salt bridges in homeodomain stability and DNA binding.

Authors:  Mario Torrado; Julia Revuelta; Carlos Gonzalez; Francisco Corzana; Agatha Bastida; Juan Luis Asensio
Journal:  J Biol Chem       Date:  2009-06-26       Impact factor: 5.157

4.  Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences.

Authors:  Michael F Berger; Gwenael Badis; Andrew R Gehrke; Shaheynoor Talukder; Anthony A Philippakis; Lourdes Peña-Castillo; Trevis M Alleyne; Sanie Mnaimneh; Olga B Botvinnik; Esther T Chan; Faiqua Khalid; Wen Zhang; Daniel Newburger; Savina A Jaeger; Quaid D Morris; Martha L Bulyk; Timothy R Hughes
Journal:  Cell       Date:  2008-06-27       Impact factor: 41.582

5.  1H, 13C and 15N chemical shift assignments for the human Pitx2 homeodomain and a R24H homeodomain mutant.

Authors:  Thomas Doerdelmann; Douglas J Kojetin; Jamie M Baird-Titus; Mark Rance
Journal:  Biomol NMR Assign       Date:  2010-11-04       Impact factor: 0.746

Review 6.  Hox genes and their candidate downstream targets in the developing central nervous system.

Authors:  Z N Akin; A J Nazarali
Journal:  Cell Mol Neurobiol       Date:  2005-06       Impact factor: 5.046

7.  The Homeodomain Resource: a comprehensive collection of sequence, structure, interaction, genomic and functional information on the homeodomain protein family.

Authors:  R Travis Moreland; Joseph F Ryan; Christopher Pan; Andreas D Baxevanis
Journal:  Database (Oxford)       Date:  2009-04-17       Impact factor: 3.451

8.  Cognate Site Identifier analysis reveals novel binding properties of the Sex Inducer homeodomain proteins of Cryptococcus neoformans.

Authors:  Brynne C Stanton; Steven S Giles; Emilia K Kruzel; Christopher L Warren; Aseem Z Ansari; Christina M Hull
Journal:  Mol Microbiol       Date:  2009-05-25       Impact factor: 3.501

9.  Germline mutations of the paired-like homeobox 2B (PHOX2B) gene in neuroblastoma.

Authors:  Delphine Trochet; Franck Bourdeaut; Isabelle Janoueix-Lerosey; Anne Deville; Loïc de Pontual; Gudrun Schleiermacher; Carole Coze; Nicole Philip; Thierry Frébourg; Arnold Munnich; Stanislas Lyonnet; Olivier Delattre; Jeanne Amiel
Journal:  Am J Hum Genet       Date:  2004-03-11       Impact factor: 11.025

10.  Rhombomere-specific analysis reveals the repertoire of genetic cues expressed across the developing hindbrain.

Authors:  David Chambers; Leigh Jane Wilson; Fabienne Alfonsi; Ewan Hunter; Uma Saxena; Eric Blanc; Andrew Lumsden
Journal:  Neural Dev       Date:  2009-02-10       Impact factor: 3.842

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