Literature DB >> 21052876

1H, 13C and 15N chemical shift assignments for the human Pitx2 homeodomain and a R24H homeodomain mutant.

Thomas Doerdelmann1, Douglas J Kojetin, Jamie M Baird-Titus, Mark Rance.   

Abstract

The homeodomain is one of the most important eukaryotic DNA-binding motifs and has been identified in over one thousand proteins. Homeodomain proteins play critical roles in diverse biological processes, including cell differentiation and cell pattern formation. The human Pitx2 homeodomain binds several different DNA sequences and is a pivotal component of both the TGF-β and Wnt/β-catenin signaling pathways. As the recognition of specific DNA sequences represents an essential biochemical function of all DNA-binding proteins, we have chosen the Pitx2 homeodomain model to investigate the mechanisms that convey biological specificity in these protein-DNA interactions. Here, we report complete chemical shift assignments of the human Pitx2 homeodomain and the R24H mutation that induces ring dermoid of the cornea syndrome.

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Year:  2010        PMID: 21052876      PMCID: PMC3111450          DOI: 10.1007/s12104-010-9278-x

Source DB:  PubMed          Journal:  Biomol NMR Assign        ISSN: 1874-270X            Impact factor:   0.746


  10 in total

1.  Identification of a dominant negative homeodomain mutation in Rieger syndrome.

Authors:  I Saadi; E V Semina; B A Amendt; D J Harris; K P Murphy; J C Murray; A F Russo
Journal:  J Biol Chem       Date:  2001-04-11       Impact factor: 5.157

2.  The Homeodomain Resource: 2003 update.

Authors:  Sharmila Banerjee-Basu; Travis Moreland; Benjamin J Hsu; Kenneth L Trout; Andreas D Baxevanis
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

3.  Using NMRView to visualize and analyze the NMR spectra of macromolecules.

Authors:  Bruce A Johnson
Journal:  Methods Mol Biol       Date:  2004

4.  Mutation in PITX2 is associated with ring dermoid of the cornea.

Authors:  K Xia; L Wu; X Liu; X Xi; D Liang; D Zheng; F Cai; Q Pan; Z Long; H Dai; Z Hu; B Tang; Z Zhang; J Xia
Journal:  J Med Genet       Date:  2004-12       Impact factor: 6.318

5.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

6.  Solution structure of the K50 class homeodomain PITX2 bound to DNA and implications for mutations that cause Rieger syndrome.

Authors:  Beth A Chaney; Kimber Clark-Baldwin; Vrushank Dave; Jun Ma; Mark Rance
Journal:  Biochemistry       Date:  2005-05-24       Impact factor: 3.162

7.  Cloning and characterization of a novel bicoid-related homeobox transcription factor gene, RIEG, involved in Rieger syndrome.

Authors:  E V Semina; R Reiter; N J Leysens; W L Alward; K W Small; N A Datson; J Siegel-Bartelt; D Bierke-Nelson; P Bitoun; B U Zabel; J C Carey; J C Murray
Journal:  Nat Genet       Date:  1996-12       Impact factor: 38.330

8.  A gene atlas of the mouse and human protein-encoding transcriptomes.

Authors:  Andrew I Su; Tim Wiltshire; Serge Batalov; Hilmar Lapp; Keith A Ching; David Block; Jie Zhang; Richard Soden; Mimi Hayakawa; Gabriel Kreiman; Michael P Cooke; John R Walker; John B Hogenesch
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-09       Impact factor: 11.205

9.  1H, 13C and 15N chemical shift referencing in biomolecular NMR.

Authors:  D S Wishart; C G Bigam; J Yao; F Abildgaard; H J Dyson; E Oldfield; J L Markley; B D Sykes
Journal:  J Biomol NMR       Date:  1995-09       Impact factor: 2.835

10.  Mouse Pitx2 deficiency leads to anomalies of the ventral body wall, heart, extra- and periocular mesoderm and right pulmonary isomerism.

Authors:  K Kitamura; H Miura; S Miyagawa-Tomita; M Yanazawa; Y Katoh-Fukui; R Suzuki; H Ohuchi; A Suehiro; Y Motegi; Y Nakahara; S Kondo; M Yokoyama
Journal:  Development       Date:  1999-12       Impact factor: 6.868

  10 in total
  4 in total

1.  ¹H, ¹³C and ¹⁵N chemical shift assignments for the human Pitx2 homeodomain in complex with a 22-base hairpin DNA.

Authors:  Thomas Doerdelmann; Douglas J Kojetin; Jamie M Baird-Titus; Mark Rance
Journal:  Biomol NMR Assign       Date:  2011-08-05       Impact factor: 0.746

2.  Studies of a pedigree with limbal dermoid cyst.

Authors:  Jing Zhu; Hong-Bo Cheng; Ning Fan; Chun-Ming Liu; Wen-Han Yu; Xiao-Ming Chen; Xu-Yang Liu
Journal:  Int J Ophthalmol       Date:  2012-10-18       Impact factor: 1.779

3.  Structural and biophysical insights into the ligand-free Pitx2 homeodomain and a ring dermoid of the cornea inducing homeodomain mutant.

Authors:  Thomas Doerdelmann; Douglas J Kojetin; Jamie M Baird-Titus; Laura A Solt; Thomas P Burris; Mark Rance
Journal:  Biochemistry       Date:  2012-01-06       Impact factor: 3.162

4.  PITX2 deficiency and associated human disease: insights from the zebrafish model.

Authors:  Kathryn E Hendee; Elena A Sorokina; Sanaa S Muheisen; Linda M Reis; Rebecca C Tyler; Vujica Markovic; Goran Cuturilo; Brian A Link; Elena V Semina
Journal:  Hum Mol Genet       Date:  2018-05-15       Impact factor: 6.150

  4 in total

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