Literature DB >> 15318002

Using NMRView to visualize and analyze the NMR spectra of macromolecules.

Bruce A Johnson1.   

Abstract

Nuclear magnetic resonance (NMR) experiments on macromolecules can generate a tremendous amount of data that must be analyzed and correlated to generate conclusions about the structure and dynamics of the molecular system. NMRView is a computer program that is designed to be useful in visualizing and analyzing these data. NMRView works with various types of NMR datasets and can have multiple datasets and display windows opened simultaneously. Virtually all actions of the program can be controlled through the Tcl scripting language, and new graphical user interface components can be added with the Tk toolkit. NMR spectral peaks can be analyzed and assigned. A suite of tools exists within NMRView for assigning the data from triple-resonance experiments.

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Year:  2004        PMID: 15318002     DOI: 10.1385/1-59259-809-9:313

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  518 in total

1.  Combined in silico and experimental approach for drug design: the binding mode of peptidic and non-peptidic inhibitors to hsp90 N-terminal domain.

Authors:  Simona Tomaselli; Massimiliano Meli; Janet Plescia; Lucia Zetta; Dario C Altieri; Giorgio Colombo; Laura Ragona
Journal:  Chem Biol Drug Des       Date:  2010-11       Impact factor: 2.817

2.  The RelA nuclear localization signal folds upon binding to IκBα.

Authors:  Carla F Cervantes; Simon Bergqvist; Magnus Kjaergaard; Gerard Kroon; Shih-Che Sue; H Jane Dyson; Elizabeth A Komives
Journal:  J Mol Biol       Date:  2010-11-19       Impact factor: 5.469

3.  NMR protein structure determination in living E. coli cells using nonlinear sampling.

Authors:  Teppei Ikeya; Atsuko Sasaki; Daisuke Sakakibara; Yoshiki Shigemitsu; Junpei Hamatsu; Tomomi Hanashima; Masaki Mishima; Masatoshi Yoshimasu; Nobuhiro Hayashi; Tsutomu Mikawa; Daniel Nietlispach; Markus Wälchli; Brian O Smith; Masahiro Shirakawa; Peter Güntert; Yutaka Ito
Journal:  Nat Protoc       Date:  2010-05-13       Impact factor: 13.491

4.  Structural dynamics and multiregion interactions in dynein-dynactin recognition.

Authors:  Jessica L Morgan; Yujuan Song; Elisar Barbar
Journal:  J Biol Chem       Date:  2011-09-19       Impact factor: 5.157

5.  Membrane binding of the N-terminal ubiquitin-like domain of kindlin-2 is crucial for its regulation of integrin activation.

Authors:  H Dhanuja Perera; Yan-Qing Ma; Jun Yang; Jamila Hirbawi; Edward F Plow; Jun Qin
Journal:  Structure       Date:  2011-11-09       Impact factor: 5.006

6.  Structural basis of the interplay between α-synuclein and Tau in regulating pathological amyloid aggregation.

Authors:  Jinxia Lu; Shengnan Zhang; Xiaojuan Ma; Chunyu Jia; Zhenying Liu; Chengan Huang; Cong Liu; Dan Li
Journal:  J Biol Chem       Date:  2020-04-13       Impact factor: 5.157

7.  Nanoformulated copper/zinc superoxide dismutase exerts differential effects on glucose vs lipid homeostasis depending on the diet composition possibly via altered AMPK signaling.

Authors:  Gopalakrishnan Natarajan; Curtis Perriotte-Olson; Fatema Bhinderwala; Robert Powers; Cyrus V Desouza; Geoffrey A Talmon; Jiang Yuhang; Matthew C Zimmerman; Alexander V Kabanov; Viswanathan Saraswathi
Journal:  Transl Res       Date:  2017-08-15       Impact factor: 7.012

8.  Structure of the 30 kDa HIV-1 RNA Dimerization Signal by a Hybrid Cryo-EM, NMR, and Molecular Dynamics Approach.

Authors:  Kaiming Zhang; Sarah C Keane; Zhaoming Su; Rossitza N Irobalieva; Muyuan Chen; Verna Van; Carly A Sciandra; Jan Marchant; Xiao Heng; Michael F Schmid; David A Case; Steven J Ludtke; Michael F Summers; Wah Chiu
Journal:  Structure       Date:  2018-02-02       Impact factor: 5.006

9.  Reevaluation of the requirement for TIP47 in human immunodeficiency virus type 1 envelope glycoprotein incorporation.

Authors:  Mary Ann Checkley; Benjamin G Luttge; Peter Y Mercredi; Sampson K Kyere; Justin Donlan; Tsutomu Murakami; Michael F Summers; Simon Cocklin; Eric O Freed
Journal:  J Virol       Date:  2013-01-16       Impact factor: 5.103

10.  Refolded recombinant Siglec5 for NMR investigation of complex carbohydrate binding.

Authors:  Adam W Barb; Xu Wang; James H Prestegard
Journal:  Protein Expr Purif       Date:  2013-01-12       Impact factor: 1.650

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