Literature DB >> 21806918

Site-specific solid-state NMR detection of hydrogen-deuterium exchange reveals conformational changes in a 7-helical transmembrane protein.

Shenlin Wang1, Lichi Shi, Izuru Kawamura, Leonid S Brown, Vladimir Ladizhansky.   

Abstract

Solid-state NMR spectroscopy is an efficient tool for following conformational dynamics of membrane proteins at atomic resolution. We used this technique for the site-specific detection of light-induced hydrogen-deuterium exchange in the lipid-embedded heptahelical transmembrane photosensor Anabaena sensory rhodopsin to pinpoint the location of its conformational changes upon activation. We show that the light-induced conformational changes result in a dramatic, but localized, increase in the exchange in the transmembrane regions. Most notably, the cytoplasmic half of helix G and the cytoplasmic ends of helices B and C exchange more extensively, probably as a result of their relative displacement in the activated state, allowing water to penetrate into the core of the protein. These light-induced rearrangements must provide the structural basis for the photosensory function of Anabaena sensory rhodopsin.
Copyright © 2011 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21806918      PMCID: PMC3145272          DOI: 10.1016/j.bpj.2011.06.035

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  21 in total

1.  Sensory rhodopsin II and bacteriorhodopsin: light activated helix F movement.

Authors:  Johann P Klare; Enrica Bordignon; Martin Engelhard; Heinz-Jürgen Steinhoff
Journal:  Photochem Photobiol Sci       Date:  2004-05-19       Impact factor: 3.982

2.  Anabaena sensory rhodopsin: a photochromic color sensor at 2.0 A.

Authors:  Lutz Vogeley; Oleg A Sineshchekov; Vishwa D Trivedi; Jun Sasaki; John L Spudich; Hartmut Luecke
Journal:  Science       Date:  2004-09-30       Impact factor: 47.728

3.  Crystal structure of the Anabaena sensory rhodopsin transducer.

Authors:  Lutz Vogeley; Vishwa D Trivedi; Oleg A Sineshchekov; Elena N Spudich; John L Spudich; Hartmut Luecke
Journal:  J Mol Biol       Date:  2006-12-01       Impact factor: 5.469

Review 4.  Structure and dynamics of membrane proteins by magic angle spinning solid-state NMR.

Authors:  Ann McDermott
Journal:  Annu Rev Biophys       Date:  2009       Impact factor: 12.981

5.  Amide protein exchange and surface conformation of the basic pancreatic trypsin inhibitor in solution. Studies with two-dimensional nuclear magnetic resonance.

Authors:  G Wagner; K Wüthrich
Journal:  J Mol Biol       Date:  1982-09-15       Impact factor: 5.469

6.  Cytoplasmic shuttling of protons in anabaena sensory rhodopsin: implications for signaling mechanism.

Authors:  Lichi Shi; Sa Ryong Yoon; Arandi G Bezerra; Kwang-Hwan Jung; Leonid S Brown
Journal:  J Mol Biol       Date:  2006-03-02       Impact factor: 5.469

7.  Photochromism of Anabaena sensory rhodopsin.

Authors:  Akira Kawanabe; Yuji Furutani; Kwang-Hwan Jung; Hideki Kandori
Journal:  J Am Chem Soc       Date:  2007-06-15       Impact factor: 15.419

8.  Chemical shift assignment of the transmembrane helices of DsbB, a 20-kDa integral membrane enzyme, by 3D magic-angle spinning NMR spectroscopy.

Authors:  Ying Li; Deborah A Berthold; Robert B Gennis; Chad M Rienstra
Journal:  Protein Sci       Date:  2008-02       Impact factor: 6.725

9.  Three-dimensional solid-state NMR study of a seven-helical integral membrane proton pump--structural insights.

Authors:  Lichi Shi; Mumdooh A M Ahmed; Wurong Zhang; Gregg Whited; Leonid S Brown; Vladimir Ladizhansky
Journal:  J Mol Biol       Date:  2009-03-06       Impact factor: 5.469

10.  FTIR study of the L intermediate of Anabaena sensory rhodopsin: structural changes in the cytoplasmic region.

Authors:  Akira Kawanabe; Yuji Furutani; Sa Ryong Yoon; Kwang-Hwan Jung; Hideki Kandori
Journal:  Biochemistry       Date:  2008-08-30       Impact factor: 3.162

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  10 in total

1.  Proton detection for signal enhancement in solid-state NMR experiments on mobile species in membrane proteins.

Authors:  Meaghan E Ward; Emily Ritz; Mumdooh A M Ahmed; Vladimir V Bamm; George Harauz; Leonid S Brown; Vladimir Ladizhansky
Journal:  J Biomol NMR       Date:  2015-10-22       Impact factor: 2.835

2.  Solid-state NMR spectroscopy structure determination of a lipid-embedded heptahelical membrane protein.

Authors:  Shenlin Wang; Rachel A Munro; Lichi Shi; Izuru Kawamura; Takashi Okitsu; Akimori Wada; So-Young Kim; Kwang-Hwan Jung; Leonid S Brown; Vladimir Ladizhansky
Journal:  Nat Methods       Date:  2013-09-08       Impact factor: 28.547

3.  Insights into the mechanism of membrane fusion induced by the plant defense element, plant-specific insert.

Authors:  Xiaoli Zhao; Jenny Jingxin Tian; Hua Yu; Brian C Bryksa; John H Dupuis; Xiuyuan Ou; Zhaohui Qian; Chen Song; Shenlin Wang; Rickey Y Yada
Journal:  J Biol Chem       Date:  2020-07-10       Impact factor: 5.157

4.  Probing Residue-Specific Water-Protein Interactions in Oriented Lipid Membranes via Solid-State NMR Spectroscopy.

Authors:  Alysha Dicke; T Gopinath; Yingjie Wang; Gianluigi Veglia
Journal:  J Phys Chem B       Date:  2016-10-18       Impact factor: 2.991

5.  Hydration and Dynamics of Full-Length Tau Amyloid Fibrils Investigated by Solid-State Nuclear Magnetic Resonance.

Authors:  Aurelio J Dregni; Pu Duan; Mei Hong
Journal:  Biochemistry       Date:  2020-06-05       Impact factor: 3.162

6.  In situ structural studies of Anabaena sensory rhodopsin in the E. coli membrane.

Authors:  Meaghan E Ward; Shenlin Wang; Rachel Munro; Emily Ritz; Ivan Hung; Peter L Gor'kov; Yunjiang Jiang; Hongjun Liang; Leonid S Brown; Vladimir Ladizhansky
Journal:  Biophys J       Date:  2015-04-07       Impact factor: 4.033

7.  Protein-solvent interfaces in human Y145Stop prion protein amyloid fibrils probed by paramagnetic solid-state NMR spectroscopy.

Authors:  Darryl Aucoin; Yongjie Xia; Theint Theint; Philippe S Nadaud; Krystyna Surewicz; Witold K Surewicz; Christopher P Jaroniec
Journal:  J Struct Biol       Date:  2018-04-18       Impact factor: 2.867

8.  Solid-State NMR Spectroscopy on Microbial Rhodopsins.

Authors:  Clara Nassrin Kriebel; Johanna Becker-Baldus; Clemens Glaubitz
Journal:  Methods Mol Biol       Date:  2022

9.  Probing membrane protein structure using water polarization transfer solid-state NMR.

Authors:  Jonathan K Williams; Mei Hong
Journal:  J Magn Reson       Date:  2014-08-25       Impact factor: 2.229

10.  Characterization of H/D exchange in type 1 pili by proton-detected solid-state NMR and molecular dynamics simulations.

Authors:  Songhwan Hwang; Carl Öster; Veniamin Chevelkov; Karin Giller; Sascha Lange; Stefan Becker; Adam Lange
Journal:  J Biomol NMR       Date:  2019-04-26       Impact factor: 2.835

  10 in total

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