Literature DB >> 29679649

Protein-solvent interfaces in human Y145Stop prion protein amyloid fibrils probed by paramagnetic solid-state NMR spectroscopy.

Darryl Aucoin1, Yongjie Xia1, Theint Theint1, Philippe S Nadaud1, Krystyna Surewicz2, Witold K Surewicz2, Christopher P Jaroniec3.   

Abstract

The C-terminally truncated Y145Stop variant of prion protein (PrP23-144), which is associated with heritable PrP cerebral amyloid angiopathy in humans and also capable of triggering a transmissible prion disease in mice, serves as a useful in vitro model for investigating the molecular and structural basis of amyloid strains and cross-seeding specificities. Here, we determine the protein-solvent interfaces in human PrP23-144 amyloid fibrils generated from recombinant 13C,15N-enriched protein and incubated in aqueous solution containing paramagnetic Cu(II)-EDTA, by measuring residue-specific 15N longitudinal paramagnetic relaxation enhancements using two-dimensional magic-angle spinning solid-state NMR spectroscopy. To further probe the interactions of the amyloid core residues with solvent molecules we perform complementary measurements of amide hydrogen/deuterium exchange detected by solid-state NMR and solution NMR methods. The solvent accessibility data are evaluated in the context of the structural model for human PrP23-144 amyloid.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Amyloids; Hydrogen/deuterium exchange; Paramagnetic solid-state NMR; Prions; Protein aggregation

Mesh:

Substances:

Year:  2018        PMID: 29679649      PMCID: PMC6193857          DOI: 10.1016/j.jsb.2018.04.002

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  47 in total

1.  Nucleation-dependent conformational conversion of the Y145Stop variant of human prion protein: structural clues for prion propagation.

Authors:  Bishwajit Kundu; Nilesh R Maiti; Eric M Jones; Krystyna A Surewicz; David L Vanik; Witold K Surewicz
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-30       Impact factor: 11.205

2.  Structural polymorphism in amyloids: new insights from studies with Y145Stop prion protein fibrils.

Authors:  Eric M Jones; Bo Wu; Krystyna Surewicz; Philippe S Nadaud; Jonathan J Helmus; Shugui Chen; Christopher P Jaroniec; Witold K Surewicz
Journal:  J Biol Chem       Date:  2011-10-15       Impact factor: 5.157

3.  Probing the conformation of a prion protein fibril with hydrogen exchange.

Authors:  Steven M Damo; Aaron H Phillips; Anisa L Young; Sheng Li; Virgil L Woods; David E Wemmer
Journal:  J Biol Chem       Date:  2010-08-02       Impact factor: 5.157

4.  3D structure of Alzheimer's amyloid-beta(1-42) fibrils.

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Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-17       Impact factor: 11.205

5.  Structure and dynamics of the HIV-1 Vpu transmembrane domain revealed by solid-state NMR with magic-angle spinning.

Authors:  Simon Sharpe; Wai-Ming Yau; Robert Tycko
Journal:  Biochemistry       Date:  2006-01-24       Impact factor: 3.162

6.  Molecular conformation and dynamics of the Y145Stop variant of human prion protein in amyloid fibrils.

Authors:  Jonathan J Helmus; Krystyna Surewicz; Philippe S Nadaud; Witold K Surewicz; Christopher P Jaroniec
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-24       Impact factor: 11.205

7.  Solid-state NMR structural studies of the fibril form of a mutant mouse prion peptide PrP89-143(P101L).

Authors:  Kwang Hun Lim; Tuan N Nguyen; Steven M Damo; Tanya Mazur; Haydn L Ball; Stanley B Prusiner; Alexander Pines; David E Wemmer
Journal:  Solid State Nucl Magn Reson       Date:  2005-10-26       Impact factor: 2.293

8.  Measurement of backbone hydrogen-deuterium exchange in the type III secretion system needle protein PrgI by solid-state NMR.

Authors:  Veniamin Chevelkov; Karin Giller; Stefan Becker; Adam Lange
Journal:  J Magn Reson       Date:  2017-09-01       Impact factor: 2.229

9.  Quantification of protein backbone hydrogen-deuterium exchange rates by solid state NMR spectroscopy.

Authors:  Juan-Miguel Lopez del Amo; Uwe Fink; Bernd Reif
Journal:  J Biomol NMR       Date:  2010-10-20       Impact factor: 2.835

10.  Solid-state NMR and hydrogen-deuterium exchange in a bilayer-solubilized peptide: structural and mechanistic implications.

Authors:  M Cotten; R Fu; T A Cross
Journal:  Biophys J       Date:  1999-03       Impact factor: 4.033

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Journal:  Nat Commun       Date:  2022-07-13       Impact factor: 17.694

Review 2.  1H-Detected Biomolecular NMR under Fast Magic-Angle Spinning.

Authors:  Tanguy Le Marchand; Tobias Schubeis; Marta Bonaccorsi; Piotr Paluch; Daniela Lalli; Andrew J Pell; Loren B Andreas; Kristaps Jaudzems; Jan Stanek; Guido Pintacuda
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3.  Structural Studies of Amyloid Fibrils by Paramagnetic Solid-State Nuclear Magnetic Resonance Spectroscopy.

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Journal:  J Am Chem Soc       Date:  2018-10-09       Impact factor: 15.419

Review 4.  Advances in instrumentation and methodology for solid-state NMR of biological assemblies.

Authors:  Rachel W Martin; John E Kelly; Jessica I Kelz
Journal:  J Struct Biol       Date:  2018-09-08       Impact factor: 2.867

5.  Development of a new largely scalable in vitro prion propagation method for the production of infectious recombinant prions for high resolution structural studies.

Authors:  Hasier Eraña; Jorge M Charco; Michele A Di Bari; Carlos M Díaz-Domínguez; Rafael López-Moreno; Enric Vidal; Ezequiel González-Miranda; Miguel A Pérez-Castro; Sandra García-Martínez; Susana Bravo; Natalia Fernández-Borges; Mariví Geijo; Claudia D'Agostino; Joseba Garrido; Jifeng Bian; Anna König; Boran Uluca-Yazgi; Raimon Sabate; Vadim Khaychuk; Ilaria Vanni; Glenn C Telling; Henrike Heise; Romolo Nonno; Jesús R Requena; Joaquín Castilla
Journal:  PLoS Pathog       Date:  2019-10-23       Impact factor: 6.823

6.  Influence of the Dynamically Disordered N-Terminal Tail Domain on the Amyloid Core Structure of Human Y145Stop Prion Protein Fibrils.

Authors:  Zhe Qi; Krystyna Surewicz; Witold K Surewicz; Christopher P Jaroniec
Journal:  Front Mol Biosci       Date:  2022-02-14

Review 7.  DMSO-Quenched H/D-Exchange 2D NMR Spectroscopy and Its Applications in Protein Science.

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8.  Structurally distinct external solvent-exposed domains drive replication of major human prions.

Authors:  Mohammad Khursheed Siddiqi; Chae Kim; Tracy Haldiman; Miroslava Kacirova; Benlian Wang; Jen Bohon; Mark R Chance; Janna Kiselar; Jiri G Safar
Journal:  PLoS Pathog       Date:  2021-06-17       Impact factor: 6.823

9.  Cryo-EM structure of a human prion fibril with a hydrophobic, protease-resistant core.

Authors:  Calina Glynn; Michael R Sawaya; Peng Ge; Marcus Gallagher-Jones; Connor W Short; Ronquiajah Bowman; Marcin Apostol; Z Hong Zhou; David S Eisenberg; Jose A Rodriguez
Journal:  Nat Struct Mol Biol       Date:  2020-04-13       Impact factor: 15.369

10.  Dimer Organization of Membrane-Associated NS5A of Hepatitis C Virus as Determined by Highly Sensitive 1 H-Detected Solid-State NMR.

Authors:  Vlastimil Jirasko; Alons Lends; Nils-Alexander Lakomek; Marie-Laure Fogeron; Marco E Weber; Alexander A Malär; Susanne Penzel; Ralf Bartenschlager; Beat H Meier; Anja Böckmann
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  10 in total

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