Literature DB >> 21779025

Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing.

Jeremy R Haag1, Craig S Pikaard.   

Abstract

In all eukaryotes, nuclear DNA-dependent RNA polymerases I, II and III synthesize the myriad RNAs that are essential for life. Remarkably, plants have evolved two additional multisubunit RNA polymerases, RNA polymerases IV and V, which orchestrate non-coding RNA-mediated gene silencing processes affecting development, transposon taming, antiviral defence and allelic crosstalk. Biochemical details concerning the templates and products of RNA polymerases IV and V are lacking. However, their subunit compositions reveal that they evolved as specialized forms of RNA polymerase II, which provides the unique opportunity to study the functional diversification of a eukaryotic RNA polymerase family.

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Year:  2011        PMID: 21779025     DOI: 10.1038/nrm3152

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  97 in total

1.  The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene.

Authors:  W J Soppe; S E Jacobsen; C Alonso-Blanco; J P Jackson; T Kakutani; M Koornneef; A J Peeters
Journal:  Mol Cell       Date:  2000-10       Impact factor: 17.970

2.  Small RNA duplexes function as mobile silencing signals between plant cells.

Authors:  Patrice Dunoyer; Gregory Schott; Christophe Himber; Denise Meyer; Atsushi Takeda; James C Carrington; Olivier Voinnet
Journal:  Science       Date:  2010-04-22       Impact factor: 47.728

3.  JMJ14 is an H3K4 demethylase regulating flowering time in Arabidopsis.

Authors:  Falong Lu; Xia Cui; Shuaibin Zhang; Chunyan Liu; Xiaofeng Cao
Journal:  Cell Res       Date:  2010-02-23       Impact factor: 25.617

4.  Evolutionary history of plant multisubunit RNA polymerases IV and V: subunit origins via genome-wide and segmental gene duplications, retrotransposition, and lineage-specific subfunctionalization.

Authors:  S L Tucker; J Reece; T S Ream; C S Pikaard
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2011-03-29

5.  PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis.

Authors:  Rebecca A Mosher; Frank Schwach; David Studholme; David C Baulcombe
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-19       Impact factor: 11.205

6.  Intra- and intercellular RNA interference in Arabidopsis thaliana requires components of the microRNA and heterochromatic silencing pathways.

Authors:  Patrice Dunoyer; Christophe Himber; Virginia Ruiz-Ferrer; Abdelmalek Alioua; Olivier Voinnet
Journal:  Nat Genet       Date:  2007-06-10       Impact factor: 38.330

7.  RNA polymerase IV functions in paramutation in Zea mays.

Authors:  Karl F Erhard; Jennifer L Stonaker; Susan E Parkinson; Jana P Lim; Christopher J Hale; Jay B Hollick
Journal:  Science       Date:  2009-02-27       Impact factor: 47.728

Review 8.  Silencing signals in plants: a long journey for small RNAs.

Authors:  Attila Molnar; Charles Melnyk; David C Baulcombe
Journal:  Genome Biol       Date:  2011-01-11       Impact factor: 13.583

9.  Methylation as a crucial step in plant microRNA biogenesis.

Authors:  Bin Yu; Zhiyong Yang; Junjie Li; Svetlana Minakhina; Maocheng Yang; Richard W Padgett; Ruth Steward; Xuemei Chen
Journal:  Science       Date:  2005-02-11       Impact factor: 47.728

10.  Metal A and metal B sites of nuclear RNA polymerases Pol IV and Pol V are required for siRNA-dependent DNA methylation and gene silencing.

Authors:  Jeremy R Haag; Olga Pontes; Craig S Pikaard
Journal:  PLoS One       Date:  2009-01-01       Impact factor: 3.240

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  184 in total

1.  Dicer-independent RNA-directed DNA methylation in Arabidopsis.

Authors:  Dong-Lei Yang; Guiping Zhang; Kai Tang; Jingwen Li; Lan Yang; Huan Huang; Heng Zhang; Jian-Kang Zhu
Journal:  Cell Res       Date:  2015-12-08       Impact factor: 25.617

Review 2.  New perspectives on the diversification of the RNA interference system: insights from comparative genomics and small RNA sequencing.

Authors:  Alexander Maxwell Burroughs; Yoshinari Ando; L Aravind
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-12-05       Impact factor: 9.957

Review 3.  Chemical probes in plant epigenetics studies.

Authors:  Huiming Zhang; Bangshing Wang; Cheng-Guo Duan; Jian-Kang Zhu
Journal:  Plant Signal Behav       Date:  2013-06-27

Review 4.  Genomic and epigenetic insights into the molecular bases of heterosis.

Authors:  Z Jeffrey Chen
Journal:  Nat Rev Genet       Date:  2013-06-11       Impact factor: 53.242

Review 5.  Plant promoters: an approach of structure and function.

Authors:  Milena Silva Porto; Morganna Pollynne Nóbrega Pinheiro; Vandré Guevara Lyra Batista; Roseane Cavalcanti dos Santos; Péricles de Albuquerque Melo Filho; Liziane Maria de Lima
Journal:  Mol Biotechnol       Date:  2014-01       Impact factor: 2.695

Review 6.  RNA polymerase II C-terminal domain: Tethering transcription to transcript and template.

Authors:  Jeffry L Corden
Journal:  Chem Rev       Date:  2013-09-16       Impact factor: 60.622

Review 7.  Recognizing the enemy within: licensing RNA-guided genome defense.

Authors:  Phillip A Dumesic; Hiten D Madhani
Journal:  Trends Biochem Sci       Date:  2013-11-23       Impact factor: 13.807

Review 8.  RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond.

Authors:  Stephane E Castel; Robert A Martienssen
Journal:  Nat Rev Genet       Date:  2013-02       Impact factor: 53.242

Review 9.  Transcription termination by the eukaryotic RNA polymerase III.

Authors:  Aneeshkumar G Arimbasseri; Keshab Rijal; Richard J Maraia
Journal:  Biochim Biophys Acta       Date:  2012-10-23

10.  A significant fraction of 21-nucleotide small RNA originates from phased degradation of resistance genes in several perennial species.

Authors:  Thomas Källman; Jun Chen; Niclas Gyllenstrand; Ulf Lagercrantz
Journal:  Plant Physiol       Date:  2013-04-11       Impact factor: 8.340

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